YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AGAP009036-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	82	0.77
Transmembrane Helix	83	103	0.69
Cytoplasmic	104	123	0.74
Transmembrane Helix	124	142	0.82
Non-Cytoplasmic	143	245	0.89
Transmembrane Helix	246	265	0.86
Cytoplasmic	266	272	0.88
Transmembrane Helix	273	295	0.87
Non-Cytoplasmic	296	305	0.74
Transmembrane Helix	306	323	0.91
Cytoplasmic	324	331	0.75
Transmembrane Helix	332	356	0.86
Non-Cytoplasmic	357	368	0.81
Transmembrane Helix	369	391	0.91
Cytoplasmic	392	398	0.89
Transmembrane Helix	399	422	0.82
Non-Cytoplasmic	423	440	0.78
Transmembrane Helix	441	462	0.94
Cytoplasmic	463	471	0.70
Transmembrane Helix	472	490	0.83
Non-Cytoplasmic	491	493	0.80
Transmembrane Helix	494	514	0.87
Cytoplasmic	515	527	0.92
Transmembrane Helix	528	550	0.86
Non-Cytoplasmic	551	558	0.82
Transmembrane Helix	559	582	0.89
Cytoplasmic	583	596	0.91
Transmembrane Helix	597	618	0.85
Non-Cytoplasmic	619	627	0.68
Transmembrane Helix	628	650	0.66
Cytoplasmic	651	1222	0.59

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVMLKQEVN LSRRACRPTT TNNDDCLQEQ RTLLTTPTEG GSWHNDTCYG GGGANSRLVT  60
   61 VPAPAKELTD SSRSGGLPSS SSSSSLSCLL ATIVMWCTGQ VLLKLRQAGQ GGWREVQQPP 120
  121 RLSRLCIYVV FCSALLSHNA FVLARPNLSA PASGEKVPVG QLSPLDLAFD ASSGSLTSAS 180
  181 QLKRSAEAAA IIASTAPSAD GGAGHEAEDT ALGHGRVGEG EGGEHGGEHV VERYPVSQVD 240
  241 FSRVETPFVI GVWILSASIA KIGFHMTPKL SRIFPESCLL IVVGVIIGVL LRYATNLHVS 300
  301 PLTPNTFFFY MLPPIILDAG YFMPNRMFFD NIGTILLMAV IGTIFNIATI GGSLWACGQT 360
  361 GIFGVDLPFL HIFLFSSLIA AVDPVAVLAV FEEIHVNEVL YIVVFGESLL NDAVTVVMYH 420
  421 MFEVYNEIGA SEIIAVDIVS GIASFFVVAL GGTIIGVIWG FLTGLVTRFT DHVRVIEPIF 480
  481 IFVMAYLAYL NAEIFHMSGI LAITFCGITM KNYVEQNVSH KSHTTIKYAL KMLSSSAETI 540
  541 IFMFLGVATV NNKHVWNTWF VLLTIIFCSV YRILGVLILS ALANRFRIHK LTKVDQFVMS 600
  601 YGGLRGAVAF ALVLLVDVNH IPLQPMFLTT TIAVVYFTVF LQGITIKPLV KILNVKRSSK 660
  661 RKPTMNERIH ERFMDHMMAG IEDIVGKTGN YNIRDKFKRF DNRFIRPLLI KNLQGPEPKI 720
  721 LETYSKLTMR DAMDYMRRNP STIGQMSGTE SMSALFRNYT SYFGGSPSFT NLENSTRNLD 780
  781 MQELDYNPSK KDLTDAKIHH LLSEELKPYR RHRRLSYSRH AVDDRDLSTQ VNYKMQMNIR 840
  841 RMISEKKHHK RSKRVKDGKQ QNHVSFPEFV QNGSAKQFAN DYINEVLHED NEDEERQAAG 900
  901 PSEDWDGGGL TFTAKSSLDE RGAAKEDKRF SRESRFLESE QRVATPTAIE SVLPWKRVDE 960
  961 SDDNGAIKQN EFPSWASNKE YLAYNSPSAT FLGGLTQPKQ AKSVIGLFRR ESSGSGGVVI1020
 1021 GGVTDSETST PVAATTPVGR MAAVPKDKRS ASIAGYITID GGDTAGNPML DPLGISRAGP1080
 1081 HATAFPVTAS HRRNNRRGSM LELSGEAIPE ENYTKSLPER DKYGARRAPA LIKASSTNTP1140
 1141 KSAGRRSGGG GGPVNPQTTA LLSASSTDSD EDDEEEGSGD RHRADDATRR LNGAGNNDDE1200
 1201 DEDDDEDDDD EDEDCADEQH PI