YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119114234, gi...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFKKDLVLL LKPYYWVNIL MSISYIAAKR APFICNYLWT YLFQQEDQCE LDGRETEILF  60
   61 FLLIVVMIRT RKTGSVTMIN YLTSSFMYTK IANLGLWFYN DIRLGMIYFV FFILVALLLP 120
  121 EPTYTGPENV LYFRTENGLE EELEKDKRVT WLVTFYTVWN PACVNFAPIF SELSNEYALS 180
  181 NLKFGKLDIG RFPKIGEKYH VSDSSFSRQL PTVILFRQGK EVARRPYADS KGKLVKFFFS 240
  241 ADNVKAAFDL NNLYKECKDN PIKAIKSVAE KKKD

Type	Start	End	Confidence
Cytoplasmic	1	13	0.83
Transmembrane Helix	14	33	0.52
Non-Cytoplasmic	34	76	0.48
Transmembrane Helix	77	92	0.42
Cytoplasmic	93	101	0.29
Transmembrane Helix	102	124	0.78
Non-Cytoplasmic	125	274	0.51