YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|118793609, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WSIMSMVTLT PFFAFLFSIV FMASIGKSFG VRRLYVNLLV KIFEFGRQNI ESVRKQQFAN  60
   61 ITQSDPEDED APTGDNPSPD AADTGDGTGS AKTNGTLPNG GSHRYMNGRD TSSHIANAGF 120
  121 KLSNCLDYVK SGMEAIIEDQ VTSRFLAEEL KNWNLLTRTN RQYEFISWRL TVIWMIGFLI 180
  181 RYFILMPMRV LICFIGVVYC VIGFAFVGMI PTYRLRRAMN DIVFKHTFRM ITRSISGVVR 240
  241 FHHPEYKPKN CGFCVANHTT PIDIAILSTD CTYSLVIWLT LCTAVVGCVP EGSIKRALVK 300
  301 NVLIQCFGFL SSALSSVVNY HNIQNRPLNG ICVANHTSPI DVLMLMCDNC YSLIGQRHGG 360
  361 FLGVLQRALA RASPHIWFER AEAKDRILVA KRLKEHVTDP KNPPILIFPE GTCINNTSVM 420
  421 QFKKGSFEVG GVIYPVAIKY DPRFGDAFWN SSRYSMMQYL FLMMTSWAIV CDVWYLPPME 480
  481 RQEGESAIDF ANRVKRVIAD QGGLVDLVWD GQLKRSKPKK EWKEKQQEKF SKLLKGE

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.88
Transmembrane Helix	8	31	0.85
Cytoplasmic	32	164	0.98
Transmembrane Helix	165	185	0.93
Non-Cytoplasmic	186	190	0.83
Transmembrane Helix	191	213	0.90
Cytoplasmic	214	456	0.72
Transmembrane Helix	457	476	0.77
Non-Cytoplasmic	477	537	0.72