YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|118793568, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRELHHPLPM DHSEHHDYSQ HANMSSGGAH AGHTGHGTVD HSAHDHTMMD HGAHDHHHGA  60
   61 AGGMGAASPA GMVHHMMSMS FHGGYDETIL FEQWKIDSLS GLLWSMLLIF VMAALYEGLK 120
  121 YYREHLFWRT YNALQYRPVT VTEKSNGNGP AAPARPLRRA PELCSKPTML SLMHLFQTLL 180
  181 HILQVTLSFL LMLIFMTYNT WLCLAVVLGA ALGYFLFGWK KSVIVDVXXX XPPPPPPPPP 240
  241 HPAIGNTAFC LALAPMVVTS TRPDVLP

Type	Start	End	Confidence
Cytoplasmic	1	56	0.91
Transmembrane Helix	57	77	0.86
Non-Cytoplasmic	78	98	0.81
Transmembrane Helix	99	119	0.92
Cytoplasmic	120	174	0.83
Transmembrane Helix	175	195	0.72
Non-Cytoplasmic	196	197	0.44
Transmembrane Helix	198	219	0.83
Cytoplasmic	220	267	0.56