YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RFT1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.76
Transmembrane Helix	17	36	0.87
Non-Cytoplasmic	37	42	0.64
Transmembrane Helix	43	62	0.77
Cytoplasmic	63	82	0.90
Transmembrane Helix	83	105	0.92
Non-Cytoplasmic	106	118	0.85
Transmembrane Helix	119	141	0.87
Cytoplasmic	142	152	0.85
Transmembrane Helix	153	174	0.84
Non-Cytoplasmic	175	181	0.60
Transmembrane Helix	182	202	0.89
Cytoplasmic	203	334	0.97
Transmembrane Helix	335	354	0.93
Non-Cytoplasmic	355	373	0.84
Transmembrane Helix	374	395	0.89
Cytoplasmic	396	403	0.87
Transmembrane Helix	404	423	0.93
Non-Cytoplasmic	424	430	0.72
Transmembrane Helix	431	450	0.91
Cytoplasmic	451	461	0.84
Transmembrane Helix	462	484	0.85
Non-Cytoplasmic	485	498	0.75
Transmembrane Helix	499	519	0.94
Cytoplasmic	520	541	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSQEVLGHA ARLASSGLLL QVLFRLITFV LNAFILRFLS KEIVGVVNVR LTLLYSTTLF  60
   61 LAREAFRRAC LSGGTQRDWS QTLNLLWLTV PLGVFWSLFL GWIWLQLLEV PDPNVVPHYA 120
  121 TGVVLFGLSA VVELLGEPFW VLAQAHMFVK LKVIAESLSV ILKSVLTAFL VLWLPHWGLY 180
  181 IFSLAQLFYT TVLVLCYVIY FTKLLGSPES TKLQTLPVSR ITDLLPNITR NGAFINWKEA 240
  241 KLTWSFFKQS FLKQILTEGE RYVMTFLNVL NFGDQGVYDI VNNLGSLVAR LIFQPIEESF 300
  301 YIFFAKVLER GKDATLQKQE DVAVAAAVLE SLLKLALLAG LTITVFGFAY SQLALDIYGG 360
  361 TMLSSGSGPV LLRSYCLYVL LLAINGVTEC FTFAAMSKEE VDRYNFVMLA LSSSFLVLSY 420
  421 LLTRWCGSVG FILANCFNMG IRITQSLCFI HRYYRRSPHR PLAGLHLSPV LLGTFALSGG 480
  481 VTAVSEVFLC CEQGWPARLA HIAVGAFCLG ATLGTAFLTE TKLIHFLRTQ LGVPRRTDKM 540
  541 T