YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CWH43
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.90
Transmembrane Helix	8	26	0.83
Non-Cytoplasmic	27	41	0.72
Transmembrane Helix	42	64	0.85
Cytoplasmic	65	92	0.60
Transmembrane Helix	93	113	0.89
Non-Cytoplasmic	114	119	0.57
Transmembrane Helix	120	141	0.90
Cytoplasmic	142	194	0.68
Transmembrane Helix	195	214	0.94
Non-Cytoplasmic	215	235	0.75
Transmembrane Helix	236	257	0.91
Cytoplasmic	258	274	0.61
Transmembrane Helix	275	298	0.87
Non-Cytoplasmic	299	315	0.71
Transmembrane Helix	316	339	0.87
Cytoplasmic	340	348	0.68
Transmembrane Helix	349	367	0.81
Non-Cytoplasmic	368	394	0.59
Transmembrane Helix	395	412	0.87
Cytoplasmic	413	699	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSLWREILL ESLLGCVSWS LYHDLGPMIY YFPLQTLELT GLEGFSIAFL SPIFLTITPF  60
   61 WKLVNKKWML TLLRIITIGS IASFQAPNAK LRLMVLALGV SSSLIVQAVT WWSGSHLQRY 120
  121 LRIWGFILGQ IVLVVLRIWY TSLNPIWSYQ MSNKVILTLS AIATLDRIGT DGDCSKPEEK 180
  181 KTGEVATGMA SRPNWLLAGA AFGSLVFLTH WVFGEVSLVS RWAVSGHPHP GPDPNPFGGA 240
  241 VLLCLASGLM LPSCLWFRGT GLIWWVTGTA SAAGLLYLHT WAAAVSGCVF AIFTASMWPQ 300
  301 TLGHLINSGT NPGKTMTIAM IFYLLEIFFC AWCTAFKFVP GGVYARERSD VLLGTMMLII 360
  361 GLNMLFGPKK NLDLLLQTKN SSKVLFRKSE KYMKLFLWLL VGVGLLGLGL RHKAYERKLG 420
  421 KVAPTKEVSA AIWPFRFGYD NEGWSSLERS AHLLNETGAD FITILESDAS KPYMGNNDLT 480
  481 MWLGEKLGFY TDFGPSTRYH TWGIMALSRY PIVKSEHHLL PSPEGEIAPA ITLTVNISGK 540
  541 LVDFVVTHFG NHEDDLDRKL QAIAVSKLLK SSSNQVIFLG YITSAPGSRD YLQLTEHGNV 600
  601 KDIDSTDHDR WCEYIMYRGL IRLGYARISH AELSDSEIQM AKFRIPDDPT NYRDNQKVVI 660
  661 DHREVSEKIH FNPRFGSYKE GHNYENNHNF HMNTPKYFL