YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116099753, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	25	0.83
Transmembrane Helix	26	46	0.78
Non-Cytoplasmic	47	53	0.63
Transmembrane Helix	54	73	0.89
Cytoplasmic	74	79	0.79
Transmembrane Helix	80	102	0.86
Non-Cytoplasmic	103	107	0.85
Transmembrane Helix	108	129	0.92
Cytoplasmic	130	134	0.87
Transmembrane Helix	135	157	0.88
Non-Cytoplasmic	158	174	0.89
Transmembrane Helix	175	193	0.96
Cytoplasmic	194	201	0.78
Transmembrane Helix	202	225	0.91
Non-Cytoplasmic	226	246	0.88
Transmembrane Helix	247	269	0.92
Cytoplasmic	270	324	0.79
Transmembrane Helix	325	344	0.76
Non-Cytoplasmic	345	351	0.57
Transmembrane Helix	352	371	0.89
Cytoplasmic	372	381	0.85
Transmembrane Helix	382	403	0.93
Non-Cytoplasmic	404	411	0.81
Transmembrane Helix	412	432	0.96
Cytoplasmic	433	457	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSTKSATSS SSENGQSLST WKAAILGFQH LLAMYSGDVL VPLLIGGALH FNAMQMAYLI  60
   61 SADIFMCGIA TLLQLKRTPL TGIGLPVVLG CAVQAVTPLE AIGSNYGVGA MYGAIISAGI 120
  121 FVFLSAGWFS RIKNFFPPVV TGSLITIIGF TLIPVGFQDL GGGSATAKNF GDPKFLLIGF 180
  181 LTMAIILGLN AFAKGFMKSL AILAGILIGT LIAGGMGMVS LAPVAQASWF HLPQFFYFGT 240
  241 PKFEWSSILT MILVSLTTMV ESTGVFFALA DITGKKLEEN DLKRGYRAEG IAVILGGLFN 300
  301 TFPYSTFSEN VGVVQLSGVK TRKPLYFSAA FLILLGMLPK IGALATVIPN PVLGGAMIVM 360
  361 FGMVGVQGIR MLQQVDFKDN NNLLVSAISI GLGLGVTVYP QIFQAFPQSL QIILNNGVVI 420
  421 GSFSAVILNI IFNMRPHRAI SPAQAQVNSN AQSQNRN