YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116098618, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.80
Transmembrane Helix	6	28	0.87
Cytoplasmic	29	43	0.87
Transmembrane Helix	44	66	0.89
Non-Cytoplasmic	67	74	0.75
Transmembrane Helix	75	95	0.48
Cytoplasmic	96	102	0.52
Transmembrane Helix	103	121	0.53
Non-Cytoplasmic	122	131	0.65
Transmembrane Helix	132	153	0.89
Cytoplasmic	154	160	0.70
Transmembrane Helix	161	182	0.89
Non-Cytoplasmic	183	187	0.73
Transmembrane Helix	188	209	0.89
Cytoplasmic	210	213	0.81
Transmembrane Helix	214	235	0.83
Non-Cytoplasmic	236	239	0.79
Transmembrane Helix	240	262	0.87
Cytoplasmic	263	291	0.90
Transmembrane Helix	292	311	0.92
Non-Cytoplasmic	312	319	0.64
Transmembrane Helix	320	341	0.90
Cytoplasmic	342	364	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFEIIVSLF ATMIISAVLT PFVRRFAFQI GAVDKPNQRR VNKVPMPTLG GLAIFIAFTF  60
   61 STMFLLRDQM PTQQLWGLFG GECIIVAEGM IDDVFELSPK QKILGQLLAA LEVYFVAGVK 120
  121 MRYLTLPFIG VWHFGWLALP ITLLWIVAIV NAINLIDGLD GLATGVSIIA LTTTGITGLF 180
  181 FLNVANTWVA IMIFALVAAM LGFLPYNFFP ARIYLGDTGA QFIGFMIACF SLYGLKNVTF 240
  241 ISVVIPVIIL GVPITDTVYA MIRRILNRQP ISHADKHHLH HRLMQLGLTH RQTVLVIYGI 300
  301 ALIFSFISLL YPLSTIWGSV LLTIAILVGL ELFVEAIGLV GSNRQPLLHW INRVVQKLTS 360
  361 KNSD