YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27894291, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDNDIKRLL YTHLLCIFSI ILSVFIPSLF LENFSILETH LTWLCICSGF VTAVNLVLYL  60
   61 VVKPNTSSKR SSLSHKVTGF LKCCIYFLMS CFSFHVIFVL YGAPLIELAL ETFLFAVILS 120
  121 TFTTVPCLCL LGPNLKAWLR VFSRNGVTSI WENSLQITTI SSFVGAWLGA LPIPLDWERP 180
  181 WQMTVERKRS TYRSLHVPCR GLGTVK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.99
Transmembrane Helix	9	31	0.93
Non-Cytoplasmic	32	39	0.89
Transmembrane Helix	40	62	0.96
Cytoplasmic	63	82	0.88
Transmembrane Helix	83	103	0.92
Non-Cytoplasmic	104	111	0.81
Transmembrane Helix	112	134	0.91
Cytoplasmic	135	153	0.88
Transmembrane Helix	154	173	0.84
Non-Cytoplasmic	174	206	0.87