YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPDA_LACBA
Protein type:	Globular with Signal Peptide
Type Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKIAVLGA GSWGSILASV LDENGHDVRL WSYNPKQVEE LNTQHTNTHY IKDFTFSPSL  60
   61 VAYSDLASAL TDVDAILFVV PTKAIRSVAG QVATILQDQH LQPQLIHASK GIEQQTYKRL 120
  121 SQVLEEEIPA ENRQAVTVLS GPSHAEDVAR KDITLVTAAS ASPEAAKYVQ KLFMTSYFRV 180
  181 YTNPDIIGVE IGAALKNIIA LGAGALHGLG YGDNAKAALM TRGLAEISRL GTSFGADPMT 240
  241 FIGLSGVGDI IVTATSSNSR NWRAGDELGR GEALDDVINH MGMVIEGLAT TKAAYELSRE 300
  301 RGVSMPITEA IYQVIYEGKD IRTAISDLMQ REGRSEF

Type	Start	End	Confidence
Signal Peptide	1	18	0.85
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	337	0.96