YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116047967
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPPSASPRA GRGPWQELLL AVSLLAFWNP PTTAQVTVES VPPNAAEGKD ALLRVLNLPG  60
   61 DTASLTWFKG ETVLPTHKIL LYVIDTKITT PGPAYSGRET IYPNGSLLFQ NITLNDTGSY 120
  121 ILQIINQKFE TALVRGQLQV FQPVSQPLLT ASNTTVTKDD SVVLTCSSNN TGVSIQWFFN 180
  181 GQILTLTDRM KLSQDNSTLT IDPVRKEDAG KYQCEVSNPV SSNKSDPVRL DVEDDSTEQS 240
  241 SGLPPGAIAG IVIGVVAGVA VIAALVYLQY FRKTGGSGPV

Type	Start	End	Confidence
Signal Peptide	1	34	0.99
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	245	0.99
Transmembrane Helix	246	268	0.95
Cytoplasmic	269	280	0.91