YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116043976
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.71
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAFHADDQV QLSFKLQVNV PVRVLELSES HPANGEQILR CRGRGMPQPN VTWSTCRDLK  60
   61 RCPRKLSPTP LGNSSKEESQ LETNVTFWEE DQEYEVVSTL RLRHVDQPLS VRCMLQNSMG 120
  121 RDSQEVTVVP HSLPFKVVVI SAILALVVLT VISLIILIML WQRKPRYEIR WKVIESVSSD 180
  181 GHEYIYVDPV QLPYDSTWEL PRDQLVLGRT LGSGAFGQVV EATAHGLSHS QATMKVAVKM 240
  241 LKSTARSSEK QALMSELKIM SHLGPHLNVV NLLGACTKGG PIYIITEYCR YGDLVDYLHR 300
  301 NKHTFLQRHS NKHCPPSTEL YSNALPVGLS LPSHLNLTGE SDGGYMDMSK DESVDYVPML 360
  361 DMKGHIKYAD IESSSYMAPY DNYVPSAPER TYRATLINDS PVLSYTDLVG FSYQVANGME 420
  421 FLASKNCVHR DLAARNVLIC EGKLVKICDF GLARDIMRDS NYISKGSTFL PLKWMAPESI 480
  481 FNSLYTTLSD VWSFGILLWE IFTLGGTPYP ELPMNDQFYN AIKRGYRMAQ PAHASDEIYE 540
  541 IMQKCWEEKF ETRPPFSQLV LLLERLLGEG YKKKYQQVDE EFLRSDHPAI LRSQARLPGL 600
  601 HSLRSPLDTS SVLYTAVQPN ETDNDYIIPL PDPKPDAADE GLLEGSPSLA SSTLNEVNTS 660
  661 STISCDSPLE LQEEPQAEPE AQLEQPQDSG CPGPLAEAED SFL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle