YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21265165, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.92
Transmembrane Helix	16	37	0.92
Non-Cytoplasmic	38	57	0.85
Transmembrane Helix	58	80	0.87
Cytoplasmic	81	87	0.77
Transmembrane Helix	88	107	0.91
Non-Cytoplasmic	108	113	0.64
Transmembrane Helix	114	136	0.85
Cytoplasmic	137	144	0.82
Transmembrane Helix	145	164	0.90
Non-Cytoplasmic	165	175	0.69
Transmembrane Helix	176	198	0.87
Cytoplasmic	199	246	0.98
Transmembrane Helix	247	269	0.92
Non-Cytoplasmic	270	279	0.82
Transmembrane Helix	280	301	0.87
Cytoplasmic	302	312	0.88
Transmembrane Helix	313	332	0.94
Non-Cytoplasmic	333	339	0.76
Transmembrane Helix	340	362	0.89
Cytoplasmic	363	370	0.82
Transmembrane Helix	371	393	0.87
Non-Cytoplasmic	394	404	0.90
Transmembrane Helix	405	427	0.88
Cytoplasmic	428	478	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPMPSAPPV HPPPDGGWGW IVVGAAFISI GFSYAFPKAV TVFFKEIQQI FHTTYSEIAW  60
   61 ISSIMLAVMY AGGPVSSVLV NKYGSRPVVI AGGLLCCLGM VLASFSSSVV QLYLTMGFIT 120
  121 GLGLAFNLQP ALTIIGKYFY RKRPMANGLA MAGSPVFLSS LAPFNQYLFN TFGWKGSFLI 180
  181 LGSLLLNACV AGSLMRPLGP NQTTSKSKNK TGKTEDDSSP KKIKTKKSTW EKVNKYLDFS 240
  241 LFKHRGFLIY LSGNVIMFLG FFAPIIFLAP YAKDQGIDEY SAAFLLSVMA FVDMFARPSV 300
  301 GLIANSKYIR PRIQYFFSFA IMFNGVCHLL CPLAQDYTSL VLYAVFFGLG FGSVSSVLFE 360
  361 TLMDLVGAPR FSSAVGLVTI VECGPVLLGP PLAGKLVDLT GEYKYMYMSC GAIVVAASVW 420
  421 LLIGNAINYR LLAKERKEEN ARQKTRESEP LSKSKHSEDV NVKVSNAQSV TSERETNI