YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116072597, gi...
Protein type:	Transmembrane
Type Confidence:	0.67
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSGFQSVLL LTILLAIGLV FFLRAASKDR TTVVDITSPQ SPLAVLEGLS NWLEQRGWSR  60
   61 NGGDAERQVL RFQGQVASSQ PLAILLSILG TIGSACFGLV LQQLAPQLAW WSLLPLVGLG 120
  121 PLAGVIYSSR AARTETLELR LLDAPAQGGS ALRLRAHRDE LIAIELELAE SLQLASDGSL 180
  181 LTSPI

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.54
Transmembrane Helix	7	26	0.61
Cytoplasmic	27	80	0.62
Transmembrane Helix	81	101	0.91
Non-Cytoplasmic	102	107	0.56
Transmembrane Helix	108	129	0.88
Cytoplasmic	130	185	0.66