YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VGLU1_XENTR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	64	0.97
Transmembrane Helix	65	87	0.86
Non-Cytoplasmic	88	115	0.91
Transmembrane Helix	116	137	0.82
Cytoplasmic	138	145	0.70
Transmembrane Helix	146	165	0.79
Non-Cytoplasmic	166	171	0.50
Transmembrane Helix	172	194	0.69
Cytoplasmic	195	205	0.90
Transmembrane Helix	206	229	0.88
Non-Cytoplasmic	230	236	0.77
Transmembrane Helix	237	256	0.92
Cytoplasmic	257	297	0.96
Transmembrane Helix	298	320	0.87
Non-Cytoplasmic	321	341	0.85
Transmembrane Helix	342	362	0.90
Cytoplasmic	363	378	0.84
Transmembrane Helix	379	397	0.72
Non-Cytoplasmic	398	402	0.57
Transmembrane Helix	403	425	0.87
Cytoplasmic	426	435	0.60
Transmembrane Helix	436	459	0.88
Non-Cytoplasmic	460	467	0.66
Transmembrane Helix	468	490	0.89
Cytoplasmic	491	576	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFRKEEFKK LAGNTLGHLH RILEKKQTNG ETIELTEEGR PVIKEEKRQP VVDCTCFGLP  60
   61 RRYIIAIMSG LGFCISFGIR CNLGVAIVSM VNNNTVYKGN KIVIEQAQFT WDPETVGMIH 120
  121 GSFFWGYIVT QIPGGYICQK FAANRVFGFA IVATSTLNML IPSAARVHFA CVICVRILQG 180
  181 LVEGVTYPAC HGIWSKWAPP LERSRLATTA FCGSYAGAVV AMPLAGVLVQ YSGWSSVFYV 240
  241 YGSFGIMWYM FWILVSYESP AIHPTISEEE KKYIEESIGE STGLMNPMAK FKAPWRKFFT 300
  301 SMPVYAIIVA NFCRSWTFYL LLISQPAYFE EVFGFEISKV GLLSALPHLV MTIIVPIGGQ 360
  361 IADFLRTKRI MSTTNVRKMM NCGGFGMEAT LLLVVGYSHS RGVAISFLVL AVGFSGFAIS 420
  421 GFNVNHLDIA PRYASILMGI SNGVGTLSGM VCPLIVGAMT KHKTREEWQY VFLIASLVHY 480
  481 GGVLFYGIFA SGEKQPWAEP EETSDEKCGF IHEDELADES EEQSQAYGAY GSYGATQTTS 540
  541 QQNGGWTAEW EKKEEFIQDQ GKDPYLYGTV AERDLS