YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148921768, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	25	0.91
Transmembrane Helix	26	48	0.90
Cytoplasmic	49	64	0.83
Transmembrane Helix	65	87	0.80
Non-Cytoplasmic	88	102	0.76
Transmembrane Helix	103	121	0.92
Cytoplasmic	122	142	0.85
Transmembrane Helix	143	164	0.93
Non-Cytoplasmic	165	176	0.62
Transmembrane Helix	177	195	0.91
Cytoplasmic	196	204	0.62
Transmembrane Helix	205	223	0.91
Non-Cytoplasmic	224	273	0.95
Transmembrane Helix	274	293	0.91
Cytoplasmic	294	311	0.84
Transmembrane Helix	312	334	0.84
Non-Cytoplasmic	335	380	0.94
Transmembrane Helix	381	405	0.85
Cytoplasmic	406	422	0.90
Transmembrane Helix	423	444	0.93
Non-Cytoplasmic	445	457	0.82
Transmembrane Helix	458	477	0.93
Cytoplasmic	478	484	0.87
Transmembrane Helix	485	506	0.90
Non-Cytoplasmic	507	525	0.89
Transmembrane Helix	526	548	0.90
Cytoplasmic	549	637	0.98
Transmembrane Helix	638	658	0.91
Non-Cytoplasmic	659	659	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTVSPSTI AETPEPPPLS DHIRNAADIS VIVIYFLVVM AVGLWAMLKT NRGTIGGFFL  60
   61 AGRDMAWWPM GASLFASNIG SNHYVGLAGT GAASGVATVT FEWTSSVMLL ILGWIFVPIY 120
  121 IKSGVMTMPE YLKKRFGGER LQVYLSILSL FICVVLLISA DIFAGAIFIK LALGLDLYLA 180
  181 IFILLAMTAV YTTTGGLASV IYTDTLQTII MLIGSFILMG FAFNEVGGYE SFTEKYVNAT 240
  241 PSVVEGDNLT ISASCYTPRA DSFHIFRDAV TGDIPWPGII FGMPITALWY WCTNQVIVQR 300
  301 CLCGKDMSHV KAACIMCAYL KLLPMFLMVM PGMISRILYT DMVACVVPSE CVKHCGVDVG 360
  361 CTNYAYPTMV LELMPQGLRG LMLSVMLASL MSSLTSIFNS ASTLFTIDLY TKMRKQASEK 420
  421 ELLIAGRIFV LLLTVVSIVW VPLVQVSQNG QLIHYTESIS SYLGPPIAAV FVLAIFCKRV 480
  481 NEQGAFWGLM VGLAMGLIRM ITEFAYGTGS CLAPSNCPKI ICGVHYLYFS IVLFFGSMLV 540
  541 TLGISLLTKP IPDVHLYRLC WVLRNSTEER IDIDAEEKSQ EETDDGVEED YPEKSRGCLK 600
  601 KAYDLFCGLQ KGPKLTKEEE EALSKKLTDT SERPSWRTIV NINAILLLAV VVFIHGYYA