YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116060627
Protein type:	Globular with Signal Peptide
Type Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFTTTRAFG SSARSGSSAR TANAGTTPTT SSHRIIHRAR RSRTATSATR EGEVKSDVAP  60
   61 RPFTVREGEL GKVASAAIPL VIRLGTGALI AGYKLELVED DVTKYSPIRI FGKRLNERST 120
  121 TLPSDRAKEP IVMYEYEGSP YCKKVREALS VLDCDVLFKP CPQGSEAFRA ESKRLGATTY 180
  181 PFMVDPNTGT SMGESDDIIE YLFKTYGGET KIPLLLKRDS PLTNFTAYAA AVSRLKALRA 240
  241 RPAKKIPEKP LELWTYEISP FSKLVREALT ELCIPHVVKY TPRGSRKRDE LFAEVSHFQV 300
  301 PFMRDPNTGV QMFESKEICE YIEREYGDAV

Type	Start	End	Confidence
Signal Peptide	1	19	0.55
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	330	0.99