YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116057365
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	276	0.63
Transmembrane Helix	277	292	0.28
Non-Cytoplasmic	293	295	0.41
Transmembrane Helix	296	318	0.84
Cytoplasmic	319	328	0.51
Transmembrane Helix	329	354	0.79
Non-Cytoplasmic	355	371	0.56
Transmembrane Helix	372	404	0.73
Cytoplasmic	405	413	0.72
Transmembrane Helix	414	432	0.86
Non-Cytoplasmic	433	451	0.84
Transmembrane Helix	452	474	0.88
Cytoplasmic	475	501	0.96
Transmembrane Helix	502	523	0.93
Non-Cytoplasmic	524	558	0.83
Transmembrane Helix	559	578	0.95
Cytoplasmic	579	598	0.74
Transmembrane Helix	599	619	0.88
Non-Cytoplasmic	620	649	0.68
Transmembrane Helix	650	674	0.77
Cytoplasmic	675	683	0.64
Transmembrane Helix	684	707	0.88
Non-Cytoplasmic	708	722	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGHVSARVR RTIEPARATP ILKPRMHLPR ARVSSRQSQR LLAKNLARRP LDVSQTGEQV  60
   61 QRRRVIEPNL RHERRDPQHD RPVRHEHLQR LSRVPLSSHR PFTNHALDLR RARVIVVDAE 120
  121 EKINIPNHLP RPRVANDERA LRLIPRPLLA HRVLLRQRQP FARRRSQRVL VRHPFVIPLD 180
  181 VRASIRAQLH DRAREQRVRV RPHRRARARR SRARARAAVS RIHVDAHRRV GEQSASRSSS 240
  241 GRHARPRVDV ASARRHHRAR RLARPRRRRA RVRVSRTART RXXXXXXXFG LIMTEIIHRT 300
  301 LVAFLGAAAV LFILSLQHRL PNIATILTWM DHGTLALLFG MMIIVALLSR SGVFEYLSVL 360
  361 IVHHSKGSMW RLFVMLMIFD AILSAFLDNV TTMLLLAPVA LSLCKALKID PRPLLIPMTI 420
  421 FGNIGGCATL IGDPPNIIIG NALKEYIGFV DFLRVLGPGV ILTMPFIFAF MRWYYKDTLF 480
  481 NQKINVDIDE LRKKYPIRDM NLLIRSGTIL LFVVLLFFLH PVVHMEPAYV ASFGAIAILL 540
  541 TGNHDEFEYA LEKVEWDSLL FFAGLFVFTE GIAQLGLLRA IADELSRLVA SFPEGQRQIG 600
  601 AMLIVQLVAG FASAFVDNIP FTTTMLPVIV RLSESVEGIA IEALAWALCF GADFGGIGTL 660
  661 IGSSANIVIA GIAAEAGFPI SFNMFFRVGF PVMCFSLCIA GAYLAALEGG GVFKPEVKSS 720
  721 KY