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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116058235
Protein type: Transmembrane
Type Confidence: 0.92
Topology Confidence: 0.23
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDYSCARDR DEREGAAAER AYGEFVREAR RWTSYDPESP NGQRPPWEES LETAIREGPW  60
   61 PCWDSNIPES DFVDEPTFTS FASAPEKYDP FKERVMAHKA RVRRENVEKM KKTREEVKAQ 120
  121 RFMSLAEDVR LKNKPEDDES AWDHEKIVDL INFPDDIRAK MMNCSVEIYD PRVPYDFSGM 180
  181 GAPPPTTEEF LESIGRLQPE GESDLDRVAK IAAKYGSKVP ELVEEDPAAI LQTRSDYELQ 240
  241 SAMDIGDDGE IASEEISDLE FSLKRYHRFP SSVGTASTME EPSLERSSTS HPGSYVSMSA 300
  301 NRSLRLAYSS GSSLIGPLGT SMFASLELSV STCSDRRTFG TTTWVAGRLI SIFANASSAF 360
  361 SIAVCLATVA LSVPSLKEPA VDACSITASV TTSSRPLASL HSLSSGRYVD GSIVNVALAS 420
  421 LAVRSLDSIV PLFSLTKSIK TSSFAIGTDA ENRISARRIG KIVCNFGSAS NACCFALLFG 480
  481 SIEKCMSRSA LSIIPGGYGI FVEGFTHFSA SVVTQSRNAL SASALRSSSL TLPERFHEFI 540
  541 VPRHHALAHV RVHLGRLQDV IHVLFVPSTK AQHGVLVTRD LKPRAVRLQS HHGDVGELLD 600
  601 SHRLEHGRQR ARADVDDASF ADRGVDRALE RHRRVRGTIE GNSINQSIDT ARGSRGIIML 660
  661 PLTLLKTSCG RPMLVELKNG ETYNGTLASC DTWMNVHLKE VICTSKDGDR FWRMEECYVR 720
  721 GNTIKYVCVP DEVLDKVREE MKNRPQRESR GDGGRGGRGG RGRGGRGGRG RGRGDADES

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle