YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116059768
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.85
Transmembrane Helix	9	30	0.80
Non-Cytoplasmic	31	41	0.88
Transmembrane Helix	42	66	0.83
Cytoplasmic	67	73	0.90
Transmembrane Helix	74	94	0.94
Non-Cytoplasmic	95	103	0.78
Transmembrane Helix	104	125	0.89
Cytoplasmic	126	135	0.90
Transmembrane Helix	136	156	0.90
Non-Cytoplasmic	157	163	0.63
Transmembrane Helix	164	182	0.84
Cytoplasmic	183	191	0.82
Transmembrane Helix	192	211	0.82
Non-Cytoplasmic	212	220	0.75
Transmembrane Helix	221	243	0.86
Cytoplasmic	244	248	0.74
Transmembrane Helix	249	271	0.89
Non-Cytoplasmic	272	285	0.74
Transmembrane Helix	286	305	0.91
Cytoplasmic	306	321	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPADMDAYT ETLSCIAMAP LACLTMPQVW KNFINMTTGD AAAIGAVSWQ AYAAGMLGNL  60
   61 LLLSYFAEKR ERAATGAQVV GVVTSFFLLS QIAWSGNMHN VAPVEMLLTS AFVIGGSSLS 120
  121 VARYFEYAHG NLGAKAWELY TATLGVVGVL TAPTIISHAL APGLGWLPTE IMVLALLLAA 180
  181 RAEKLPEKWS ECSGWTANVL FMSMPVVQIA QNLQNPENLQ GLSALTSVFI TMGNALMLAR 240
  241 AIFVKDFVWI VGSAWATYVG GFGVLATLFL LTNPMTSERY LGEFEFIAIT VTLILYTAIV 300
  301 IGGQLQARLA QGAASESPDG E