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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116056286
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNGPERYDA PRRRQGGGRD EFLTSAMLCV GAVSVCIVSV MIAGGLAFVG LSESRSDRAA  60
   61 MDYISRSPDA WSGMSSYRGG ELQSSGGLST GGRASSPRER FDYFAQPDRV NQDSLVEELD 120
  121 RRYGERLQAM MRELREQGNA GSQAKMDPTS MTLASTQTRG EDPSYLPPAP MTEAERDANA 180
  181 AAEPPRTTTM MRVILIPRKS PRMIRSMSER KRHTFGVLAV EEREYAETKK PQAAVNKARE 240
  241 RFEQFENTPE WHGKIRRDCD SYVERLREIE NLVKNAEGSK ATRASKQINL GVEAVRQWHA 300
  301 TISRDLKNKL AVMEVALEKI ADAKSEDKEL RVHALSEDIE DELDALTTTM DRVDKLKTAL 360
  361 SDVVHALTSA AADASATNKT ETGSTKRAAN RGRGRSDSNP KSSRTSTFAA LGSAWGSNDW 420
  421 VGTDAADATW DPIRGENDGV YVDDAAKRLD WTIPPGGSST SKLAQSELDR TPTPDDEDFD 480
  481 EKSKQRAVEK FAQAEHKSAE AWRMEAMKAQ QKLEDLAAST LENDGEMKKS AEAVERLKGL 540
  541 VSEFKKALRN YSKRNPHDRP RSARTSKSAW HKPTTWDSAL EDIKTEAAAK EADDSDSVDS 600
  601 LIDGAPTFET TIAVSSYDVP KKDVKLFRGA TLSLLAARAP GACAEKTMDV KKSTADDGSV 660
  661 RLSIKCVNAK NVEAVSKATE ALKWATESGR MGANLVKIGF KSAAAEDFSS DILTALKPIR 720
  721 FALIAGAEIQ SLYNNLDANF LLSSAYLVFF MQAGFAMLCA GSVRSKNTKN ILIKNVLDAC 780
  781 VGALAWFYFG YGFALGEASN GKLNSFIGSG NFAMKGVSGN TGIAMYLFQW SFSAAATTIV 840
  841 SGSVAERTKF EAYLGYSFFL CAFVYPVVVH WGWSGQGWLG PWRCEGSSNG CGPLLAGSGM 900
  901 LDFAGSGIVH MTGGVAGLVG AIIVGPRTGR FAPDGRVNPM PGHSAPLVVL GTFILWLGWY 960
  961 GFNPGSQLAI VAFGGAAADN SRVIARTAVT TTLSAAGGGI MAMVLNYVLY HVWDLIAVCN1020
 1021 GILAGLVGIT AGCSTTEPWA APICGALSAL VIHASSKLLL KLKIDDPLEA APMHGFCGAF1080
 1081 GVLWVGFMAK QSYVAEVFGT ARNGYMPAGV FYGGNGKLLG AQIAGICVIT AWVGATLGAF1140
 1141 FLLMKKLNLL RTSVEEETMG LDESKHGGSA YAMELVAPEP A

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle