YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116056949
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRRTARSTV DGYFFEACEK EFEAPNQYGY FPSAIEAARK KRETQNGFDK NVGLSKAEQK  60
   61 ARFKTLCSKH PELQKCQKDY VSPLRVKPST QSVINGSVVR SDGIILVPGN KEDLITWALD 120
  121 PAMSGDTLGL LLPTLFIIIG AQLKQAAGVP EYVSGAVGVT TKLLATALVA LYWVPSAFVI 180
  181 TICSPRTKIC CRRRARRSNF GAQRVCVLEC PPTTSVVPVR SLSTTRITRT VYVSSTSVRI 240
  241 MFANLSNAST YAVATPRTPR ECRVTIVTRS LRSRASRKTR RGPSRACFEF ASASHSRSRL 300
  301 ANAASSFVKR SALCFARACA AKDANPLVCL PAPCSRPTFS PVLGSNLLHC LTVSRARIRG 360
  361 NGGVAFDDFF SANTGSKSLE AKSSLESRCV LESASHPHFR SLAWTRSSFI MSDSPGAWYA 420
  421 SLPPISKFWF TACGGCTVGY HCSLIDPRAL MLSWTIVRRK FQPWRVVTNF FFLGKFSLGF 480
  481 AMRMVMIAQY AVSLEKQSFT GASATADFLT FLLFGVALLT PLELVVPSLA QAFYGDSLIF 540
  541 MCLYLWSREN PRARVSLMGV VRVGAFYFPW AMLAMTVLMG GDPVPDFLGI VAGHTYYFFT 600
  601 RLYPLRYGCR SFIRTPKFVR AIADYVNARN GVANAASNAV TPPRARYFYG RGNRLGGD

Type	Start	End	Confidence
Cytoplasmic	1	126	0.93
Transmembrane Helix	127	143	0.88
Non-Cytoplasmic	144	162	0.83
Transmembrane Helix	163	184	0.86
Cytoplasmic	185	427	0.90
Transmembrane Helix	428	445	0.74
Non-Cytoplasmic	446	465	0.64
Transmembrane Helix	466	487	0.81
Cytoplasmic	488	498	0.54
Transmembrane Helix	499	520	0.76
Non-Cytoplasmic	521	527	0.57
Transmembrane Helix	528	547	0.80
Cytoplasmic	548	557	0.85
Transmembrane Helix	558	579	0.88
Non-Cytoplasmic	580	586	0.73
Transmembrane Helix	587	605	0.81
Cytoplasmic	606	658	0.86