YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119615292, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQALSLWFL LGWIGGDSCN LIGSFLADQL PLQTYTAVYY VLADLVMLTL YFYYKFRTRP  60
   61 SLLSAPINSV LLFLMGMACA TPLLSAAGPV AAPREAFRGR ALLSVESGSK PFTRQEVIGF 120
  121 VIGSISSVLY LLSRLPQIRT NFLRKSTQGI SYSLFALVML GNTLYGLSVL LKNPEEGQSE 180
  181 GSYLLHHLPW LVGSLGVLLL DTIISIQFLV YRRSTAASEL EPLLPS

Type	Start	End	Confidence
Cytoplasmic	1	6	0.91
Transmembrane Helix	7	27	0.92
Non-Cytoplasmic	28	35	0.79
Transmembrane Helix	36	54	0.96
Cytoplasmic	55	66	0.82
Transmembrane Helix	67	88	0.88
Non-Cytoplasmic	89	116	0.85
Transmembrane Helix	117	133	0.96
Cytoplasmic	134	148	0.86
Transmembrane Helix	149	169	0.92
Non-Cytoplasmic	170	187	0.87
Transmembrane Helix	188	210	0.90
Cytoplasmic	211	226	0.96