YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116054938
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	87	0.99
Transmembrane Helix	88	108	0.87
Non-Cytoplasmic	109	143	0.95
Transmembrane Helix	144	165	0.89
Cytoplasmic	166	175	0.83
Transmembrane Helix	176	197	0.93
Non-Cytoplasmic	198	205	0.83
Transmembrane Helix	206	231	0.78
Cytoplasmic	232	241	0.79
Transmembrane Helix	242	262	0.88
Non-Cytoplasmic	263	269	0.73
Transmembrane Helix	270	290	0.95
Cytoplasmic	291	341	0.90
Transmembrane Helix	342	365	0.82
Non-Cytoplasmic	366	389	0.80
Transmembrane Helix	390	411	0.84
Cytoplasmic	412	418	0.69
Transmembrane Helix	419	437	0.84
Non-Cytoplasmic	438	447	0.61
Transmembrane Helix	448	469	0.87
Cytoplasmic	470	485	0.68
Transmembrane Helix	486	508	0.82
Non-Cytoplasmic	509	521	0.63
Transmembrane Helix	522	539	0.58
Cytoplasmic	540	625	0.77
Transmembrane Helix	626	644	0.60
Non-Cytoplasmic	645	669	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRDPIARPTH TRARRTSATT TNATRAIDAG DAARARTSSE SEREGEVDAI DFASGETRAM  60
   61 SAEGNAHKRC AAPGMRAYLW RRRRNLTASQ HRTIVLLVTF ASYAMYHASR KPPSIVKSVL 120
  121 NPDAESRASG ARGWAPFDGD DGTRVIGTCD FAFLASYSVG MFFSGHIGDR MDLRKFLTFG 180
  181 MLMSGLWVSL FGMGYYWNVH SVGYYVVVQM VAGAMQSTGW PSVVSVMGNW FGKGKRGLIM 240
  241 GVWNAHTSVG NMLGSILASM ALRSSNWGMS FIVPGVMIML CGLLVWNFLV VSPEDVGLPP 300
  301 ANAPSVSSNV EDESDEESVA LRRLINSDGS SRADREKPVG FAAALKIPGV ITFSLCLFFT 360
  361 KLVAYTFLYW LPFYIERTEI NGQYLSAAKA GELSVIFDLG GIVGGILAGY ISDRYNARSM 420
  421 TAAAFVYLSI PVLYMYREFG SRSMFTNLIL MAFSGMLVNG PYALITTAVS ADLGTHESLK 480
  481 GNARALATVT AIIDGTGSFG AAIGPMLTGY ITSISEDWNH VFYMLYIADL CAGPCPTRGR 540
  541 VSRVKPHSSS HVASARTRDV RRARCSPAPR RENALGERRR GVQSRARLRC VDECARRSDP 600
  601 SDPSGNGHGV THEGVTLHEA STAHKALGTG FGALMWFWVF YRFYHDGDTL IYGHAPHFEH 660
  661 DDHDDEHGH