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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116000599
Protein type: Transmembrane
Type Confidence: 0.91
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADADADVAV KRETKPSDFS TAILERKKAP NRLVVGACER VAIAMSSRST SMSSRSDASR  60
   61 RLTVDGDDVD EAINDDNSVV ALNLQKMEEL QLFRGDTVLL KGKKRKDSVC IVLADETCDE 120
  121 GKIRMNKVVR KNLRVRLGDV VSVHQCTDVK YGKRVHVLPF SDSIEGVSGN LFDVYLKPYF 180
  181 LEAYRPLRKG DTFLARGGMR AVEFKVVETD PAEYCIVAPD TEIFCEGEPI NREDEERLDD 240
  241 VGYDDVGGVR KQMAQIRELV ELPLRHPTLF KTIGVKPPKG ILLYGPPGSG KTLIARAVAN 300
  301 ETGAFFFLIN GPEIMSKLAG ESESNLRKAF EEAEKNAPAI IFIDEIDSIA PKREKTNGEV 360
  361 ERRIVSQLLT LMDGMKSRSH IIVMGATNRP NSIDPALRRF GRFDREIDIG VPDEVGRLEV 420
  421 LRIHTKNMKL DEAVDLEKIS KETHGYVGAD LAALSTEAAL QCIREKMDLI DLEDEEIDAA 480
  481 VLDSMAITNE HFATALTTSN PSALRETVVE VPNVSWDDIG GLETVKQELQ ETVQYPVEHP 540
  541 EKFEKFGMAP SKGVLFYGPP GCGKTLLAKA IANECQANFI SIKGPELLTM WFGESEANVR 600
  601 EIFDKARQSA PCVLFFDELD SIATQRGGNQ GDAGGAADRV LNQLLTEMDG MGSKKTVFII 660
  661 GATNRPDIID TALMRPGRLD QLVYIPLPDE PSRLSIFKAN LRKSPIAADV DLNVLAKFTN 720
  721 GFSGADITEI CQRACKYAIR ESIARDIEAE RAAAMNPDAM TDETADDPVP EITKAHFEEA 780
  781 MKHARRSVTD ADIRKYQTFS QTLHQARGFG GDFQFPTGQA NGTSNAAPAA AGGDDDDLHE 840
  841 LRLHPPCYYR ASPAAYSLDS KEEAPEIISM SSVVIAAWRH LARVFTRILH RLHSRTEFRR 900
  901 VVLQHGVVHH HASLELREIE QEFGTIRTFN LVGVELVDTL FRRLFELLVR HERRDGGLEG 960
  961 NRRRKAVVDD VRLRRISRHD LVRNRRCGRK CERLLGCIND DIVDLLRHHS RQLRASLVAN1020
 1021 DVIRHPRRHR VQNLRVFHHR RDTGTTNVCS VSAPGVSPSS RTNGFTIARD FSHFVCAPFS1080
 1081 LDAATIFIAL VIFWMFPTER IRIFTAWSEI VRTFAGTLRA CQTTRIDRQS MYRTRNSFDR1140
 1141 ARPGPDRIPG FVLSLLRAAV SAQENRKNPR GNIPSILPHR ARARAVVAST HPSLAADQPP1200
 1201 RTGAAIPRGV IDAPRAPSFI AARIATCX

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle