YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116000887
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	76	0.98
Transmembrane Helix	77	98	0.88
Non-Cytoplasmic	99	105	0.71
Transmembrane Helix	106	125	0.93
Cytoplasmic	126	141	0.92
Transmembrane Helix	142	163	0.89
Non-Cytoplasmic	164	169	0.73
Transmembrane Helix	170	190	0.90
Cytoplasmic	191	196	0.85
Transmembrane Helix	197	215	0.92
Non-Cytoplasmic	216	220	0.80
Transmembrane Helix	221	240	0.73
Cytoplasmic	241	267	0.71
Transmembrane Helix	268	288	0.91
Non-Cytoplasmic	289	304	0.70
Transmembrane Helix	305	327	0.87
Cytoplasmic	328	332	0.64
Transmembrane Helix	333	354	0.70
Non-Cytoplasmic	355	358	0.76
Transmembrane Helix	359	379	0.86
Cytoplasmic	380	399	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIVILPNRV VCGPGCDLVN TSHTEHADRI GEASHGDDDR DAPNAPTTRI DRARARTDAH  60
   61 GVDREIERDM ARDASRGALI VTAWYAANIG VLLLNKYILS VYGFKFPVFM TLCHMCMCSV 120
  121 LSATAREFKI VPKQFIRTRR HYGKVAVLAM TFALSVLGGN VSLRYIPVSF NQALGATTPF 180
  181 FTAIFAYLML HKKESTATYM TLVPVVGGIA LATWGEPSFN FFGFMACLVG VCCRALKSVL 240
  241 QGWLLSPVGE KEAEKLSHSS ENKLDSMSLL YYMSPVAIMT LGVFTLIMEP NAISAFYEAA 300
  301 ELDPWFIAIL LGNCFVAYLV NLTNFLVTAH VGALTLQVLG NAKGVVCTVV SIMLFRNPVT 360
  361 FRGIVGYTVT MIGVWLYSSS KRKSARLANA LMENAKTGV