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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115951940
Protein type: Transmembrane
Type Confidence: 0.84
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDINQQLHE VVFGGNIKSV KELLKQGSYI NQPDQDEYSY VHVEVLYVQK TVTENLINQG  60
   61 AEVRKGNNEG WIALHEAAKN GRLDVTKYLI SQGSKVNKGD NNGLTALHCA AFNGHLDVTE 120
  121 YLISQLAEVN KGDNKGWTAL HRATGNGHLD VTGYLITQGA EVNKGCNDCW TPLHHAVQNG 180
  181 HLDVTKYLIS QGSEVNMGNN EGWTALHSAA QGGHLDVTEY LISQFAEVNK GDNKGWTALH 240
  241 SATGNGHLDV IKYLISGGAE VNKGDNDAEV NRGYNGGWTP LYLAVQNGHL DVIKYLISQG 300
  301 AKVNQGNNDG RTALHCAASN GHLDVTRDLI SGGAEVHKGD NDGWTPLHRA VQNGNLDVIK 360
  361 YLISEGAGLD KGTTVGSSAL HIAAQNGYLD VIKYLISEGA EVNKGNSRRL TALHNAASNG 420
  421 HLEVTKYLIS QGAEMNQEDN DGRTALCFAA FNGHLDVTKY LISQGVEINK GESEYTALQC 480
  481 AVLNGHIDVI KYLISKGTEV NTGNKDGMTA LHSAALEGHL DVTKYLISQL ADVNKGDNSG 540
  541 LTPLHSAAQG GHLDVTKYLI SQGAEVSKSN CKEWTALHMA AQNGHLDVTK YLISQGAEIN 600
  601 KGNKDGRTAL HSAARNGHLN VTEYLISEGA EVNKGDNWGW TALHSATENG HLDVIKYLIS 660
  661 QGAENDLAGI HLAIQDGHTS TIEKLVSEGA DLNVQSTDGQ TCLHRAIKLC YESGRIVDDT 720
  721 DTLKEISDEY YKGELSPEKA LVFYLLENGA KLDVRDTTGN LPIQYAKDEV VKQMILSRLP 780
  781 SLEEIQTYRA EPSTPAIVSV EVVRRTSQEI ELEDHGVSML IPPEAVHQSD PCKITLTLLQ 840
  841 DPPSVDIQDD ESVVCYGIRC DPPNMIFHQP VKIRIPHYSL VMNPDQGKPN IVSRVLYPGT 900
  901 DVTITSRKRS SSSPNEPPYC RVYKRHLELY IGKCAEWWVL IPLEQQVIQH QLKCTPYIPD 960
  961 KIERGQEFEV HLHMHADLPG METDIRKEKK QQSYHKSHRS VPFSVESKSG DVAVTCHREG1020
 1021 KQVESKVLSL KDVCGKMRHN LLLSVTSTDE EFTGITITIT QAGRLPSLEE IQSYRAEPST1080
 1081 PAIVSVEVER NTSQEIELED HGVSMLIPPE AIHQSDRCKI TLTLLQDTPS VDIKDDESVA1140
 1141 CYGIRCGPPN MIFHQPVKIR IPHYALVVNP DQVKPNIVSR VLYPGTAFDR VPHPHLRSKL1200
 1201 HYYGIRGDSL RWTVSLLANR HQAVVVNGAR SAWMLVTSGA PQGSVIVLFL LYINDIKLNI1260
 1261 KSAMRIFADD SVIYRRIDSP SDTHILQEAK LTTQKANRTL GLLSRTLSPC TKNIKSKAYT1320
 1321 MLVRPQLEYG SEAWNPRTLT SIQSLEKVQR AAARFVYPDY RRVTSVTELV NKLGWDTLHN1380
 1381 PTYLDRNDHP LKYAVSPASI DSFKYSFYPR TIWTWNHLSA AAVTSPTVTI FQEAALPIIR1440
 1441 ALPPPVGSKL LGVVTVDMDL MSMDIDQCDN GTGIFAGTHK CRNTTSCVPV SGRGFSSGSY1500
 1501 ECRCKDRYYF PDTLAPLKTF NGSMVEQAWI VSTSEHYPGE ASAGVGDYEL DFDCRPCREG1560
 1561 CTMCMDDSPC FVANDVILRA VILSMQALCM LLTIGLIVVI LRNRTAKLIV LHKLIHNEEF1620
 1621 RERVNSRVVY DAASKWQNST FLKQNSTSNP SNDQHFNADD VREELKRLYT QLELYKTKSL1680
 1681 RIDNPHLPSK KRSSGPRWRP PRRFSRGHSL RTHSGHSESE FSSEIARSNE SLTKAVELHD1740
 1741 YRPNHVDGLE AHGHVNQKWS PQS

YRC Informatics Platform - Version 3.0
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