YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115950135
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGYAPTNDR EQHRQLTKLD YGIAGAASGA FTRVCLQPLD VLKIRFQLQE EPVKRGVPTA  60
   61 KYHSIFQAAG SIIREEGLSS MWKGHVPAQA LSIIFGVAQF VTFEGLTYMA YPLLPSDLTT 120
  121 GVYKPVYHFM CGGVSGCMAS LVSLPVDVLR TRLVSQGEPK VYKSISHALQ SMYMEAGVRT 180
  181 FYKGLTPTMM LLFPQTGLQF GFYALFTRMW KKAQDRTHIH QLSGFQSLLC GGLAGVCAKS 240
  241 GVYPLDVIKK RLQVQGFEEA RRPFGHVTHY TGFLHCIATI AKQEGMKGLF KGLSPSLLKS 300
  301 FFSVGLNFAA YEKCCQWLAQ SLLCGGLAGV CAKSGVYPLD VIKKRLQVQG FEEARRPFGH 360
  361 VTHYTGFLHC IATIAKQEGM KGLFKGLSPS LLKSFFSVGL HFAAYEKCCQ WLAQVER

Type	Start	End	Confidence
Cytoplasmic	1	87	0.91
Transmembrane Helix	88	108	0.84
Non-Cytoplasmic	109	125	0.81
Transmembrane Helix	126	146	0.85
Cytoplasmic	147	183	0.75
Transmembrane Helix	184	206	0.68
Non-Cytoplasmic	207	221	0.59
Transmembrane Helix	222	243	0.62
Cytoplasmic	244	417	0.62