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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115937013, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAERDQSVL ASSARSASYN MVLQVMFRVL TFMLNAFIIK YGYVHEDMLG VVNVRLMLLY  60
   61 STILFIAREA FRRACLSQSS KHYWPQVINL LWCSLPLGVV CATILSYVWI ALLSQPDPNI 120
  121 VPHYNTSVLV FAFSAVIELV AEPFWVVGQA MLFVRLKVVI EGIAIGIRCS LTVFFLIINP 180
  181 QIGITAFCIA QIVYSYVCVF LYFLYFSNYA TFLAKKDDSF PIKAARDFFP RHLPDKPWTS 240
  241 PELARLTWSF FKQGFLKQLL TEGERYVMTL LNVLSFSGQG IYDAVNNLGA LAARFIFLPI 300
  301 EESGYIFFSQ TLKRGHSFKQ QDKDSIQLAS KVLQALLKFV VLVGSIILIF GFAYSYLLLD 360
  361 LYAGPVLSSP PGPKLLRWFC VYVLLLAING TTECFVFAAM SQQEVDRYNT KMLGFSIVFL 420
  421 TSSWYLTKTI GSVGFILANC LNMLARIIHS IYFITKFYSG SSIRPLRGLF PSVYVLITLA 480
  481 FSWLITTMSE VGVMAHNYDK VVALISKDPQ DRDGREVDLL IPWFQNMSGL FKAQKTDVVK 540
  541 DIVRNCDFIS VPTDTVIIRQ GGKGDCFYII LSGSVSVFIN QALEDQDNVS KSPPSRARTR 600
  601 KSIPNTRPNT RPSTRVRSPE KVPQSKDRPS TAKHSKSAED QHSSSSSAKN AGESGDNTRK 660
  661 SPAERDDKRA DDSNRISGDG IGGKADGGSA NGIEIIIDDD ASESQADSGL SSDGMLVDEN 720
  721 DNDVYNNGNE SDNDDDYDDD FDSDFDYSSD EDNEDILKQN TTKLERSLFG VHIRELEAGK 780
  781 CFGELALVQN NPIRTASIIA NQQTNLIVIN RELYNRCLKA AQQHEFNLKK NFVNTFPLFR 840
  841 NWTPRQRSVM TMSLTRYQYQ YGNTMARQGA PVKGLHFITQ GSAKVSTDTV QHITQYPKFC 900
  901 TEKDVQFAKD VKTGRGTRTS HPGSSSWESG STRRGVQHCV RRKETYAEAE KDLNYKNTDM 960
  961 CVIGAGDYIG DFEVLLRLPT YSFSVKCLQG VDTFELDLNN FERQIVKKSP TTYALLKETA1020
 1021 ETKLRARVKR LVRDQQIYMP VLEAMLNRLQ MLNKPNGWKS KPKYKLDVAS TSSIGSVKVG1080
 1081 GGDEIVGEYR EKQRQFLRRR QREKRLEEKR NIQMAHAFGL GLQLEMQNMP NNMVNYEGIP1140
 1141 DIDTSTIERK ASDIFPDVPS NVKLRVDPIT GLIRSTEIRV PRNVIYQKNN GSQQGVMNTN1200
 1201 GQLVVPRSKR QLLNALENKD KTNLAVPKDE SKKDRRLRSQ TFSPGVYQSV HLKTTSSLTS1260
 1261 LNAPSKSAGR PFSGKSSNSS HQGHAHAYRP VSRLSDAQRT HSSSF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle