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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: FBpp0311004, FBp...
Protein type: Transmembrane
Type Confidence: 0.77
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNVHQFDTQ TMAESPQIRR DMGRLCATWP SKDSEDGAGT ALRAATPLTA NGATTTGLSV  60
   61 TLAPKDMQRN HLLKMPTATI EKPTITATIA SSSSTSTSTT RKSVTATRSL KLNPNILLPT 120
  121 LRILARGLLL PALILAILVG SSQAGFACLS NPCVFGVCID GLNSSYSCYC IDGYTGIQCQ 180
  181 TNWDECWSSP CQNGGTCVDG VAYYNCTCPE GFSGSNCEEN VDECMSNPCQ NGGLCRDRTN 240
  241 GYICTCQPGY LGSHCELDVA VCETGTGARC QHGGECIEGP GLEFTCDCPA GWHGRICQEE 300
  301 INECASSPCQ NGGVCVDKLA AYACACPMGY TGINCEEEIL ICADNPCQNN ALCLMEEGVP 360
  361 TCYCVPDYHG EKCEFQYDEC QLGPRCMNGG VCIDGVDTFS CSCPPLLTGM LCECLMVGEE 420
  421 SLDCNYTAPA TQSPPRRTTT TSTMAPPTVR PVTPPETTVS PSRASEEVEI IVVTTSAPAE 480
  481 VVTSVLSPSS SSSSSEEGVS VEIKTPTVAP PESGSHSISV EQTTAVPAQP EPESEQEPES 540
  541 KPHPESESAS ESETETEEEI IPGTTARPPT SRSSSSSEES PSIFTTLPPL PGKPQTSASS 600
  601 ESSGEVVTSE EYTTVPHFEV SGSKSESGSE EVTTVRPTAA PSITISVDIT SSGSSSSSSE 660
  661 SVEVFTTPAP VFVQRVTTIE TSISIDYVTP TPLPETTTPR VVPVPRPTFA PEPPLDVVET 720
  721 TASTHHLWTE VPTTAAPFFT EYPAEVLITT HRTSAGRFTT VQPPAGVTTT SPTEDSSVEL 780
  781 PTPHTPQIVV TILDSNEVIP SLITTTGSPT THHHHHHHPH HEAEGTTLQP LEEDEHHHHH 840
  841 HHDEFTTPQP VEITTGHPLQ TEDLIGVQEP AVVTTESPFA PAETTVVPVV VPATIAPLGT 900
  901 AAPPATPAPV PPATTTPPPS PPSLATETPT LPPTLPPVTL PPVTQPPPTI PPTPPSTQSA 960
  961 QTLPPPTSAI NVYTTPDGPP TASQTKPSVT ESSEEVEGTN TVSTGGRGSG GVPEEKAGDV1020
 1021 DCIKLGCYNG GTCVTTSEGS RCVCRFDRQG PLCELPIIIR NAAFSGDSYV SHRIYKDIGG1080
 1081 HESLDAVLPM HIQLKVRTRA TNGLIMLAAA QGTKGGHYMA LFLQKGLMQF QFSCGLQTML1140
 1141 LSELETPVNT GHEITIRAEL DFSRNYTHCN ASLLVNDTLA MSGDQPTWLK LLPPRLHTPE1200
 1201 AILNTWLHLG GAPQAPIGLI IELPPAQSGS GFTGCLHTLR INGQAREIFG DALDGFGITE1260
 1261 CGSLACLSSP CRNGAACIKI ETNDLDENGE KAEKWKCKCP TGYMGPTCEI SVCEDNPCQY1320
 1321 GGTCVQFPGS GYLCLCPLGK HGHYCEHNLE VALPSFSGSV NGLSSFVAYT VPIPLEYSLE1380
 1381 LSFKILPQTM SQISLLAFFG QSGYHDEKSD HLAVSFIQGY IMLTWNLGAG PRRIFTQKPI1440
 1441 DFRLDAPRVP YEIKVGRIGR QAWLSVDGKF NITGRSPGSG SRMDVLPILY LGGHEIANFN1500
 1501 TLPHDLPLHS GFQGCIYDVQ LKAGQVTVPL QETRGVRGRG VGQCGTRECH RHACQHDGAC1560
 1561 LQHGATFTCI CQEGWYGPLC AQPTNPCDSF NNKCYEDATC VPLVNGYECD CPVGRTGKNC1620
 1621 EEVIRSLSDV SLTGRRSYLA VRWPYLYDGG DKLGAKRSQM VSYRNFTKKL MPPKPITTPS1680
 1681 SHFVMKLLNE VEKQRSFSPV PLMGSKSFEE HHRVQFFFIE FQLRPLSERG LLLYFGTLNN1740
 1741 NQDKKIGFVS LSLQGGVVEF RISGPSNHVT VVRSVRMLAI GEWHKIKMAQ RGRWLTLWVE1800
 1801 GSASSALAPS AEVLVEPDSL LYIGGLKDVS KLPHNAISGF PIPFRGCVRG LVVSGTRIVL1860
 1861 NETNIVESRN IRDCDGTACG GDSCESGGHC WLDEKLQPHC ICPEYAKGDR CEYSETCKLI1920
 1921 PCKNNGRCLR SGRCSCPNGW GGFYCEIAMS KPTTPSFRGN SYLILPPPRI PMKDKRRGPS1980
 1981 LYVRPREAIQ VSLNFSTIEP DGLLLWSEHE RSKFLGLGLE AGHLKLASNL LGSTNDTVRA2040
 2041 PASGFIADGA WHWTSVLLDR SRLELQLDGE VIFTERLPEG GRSLGSTTPR STLAGRRKNS2100
 2101 SKEPTISYED VFYLGGFPNS DSVSRRTKGR FFDPFKGCLQ DIQFGAEPTA IISDFSTYQG2160
 2161 ENIGSCDLHG DEPLTV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle