YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|1006668
Protein type: Transmembrane
Type Confidence: 0.90
Topology Confidence: 0.25
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGQLDLSGK LIVKAQLGED IRRIPIHNED ITYDELVLMM QRVFRGKLLS NDEVTIKYKD  60
   61 EDGDLITIFD SSDLSFAIQC SRILKLTLFV NGQPRPLESS QVKYLRRELI ELRNKVNRLL 120
  121 DSLEPPGEPG PSTNIPENDT VDGREEKSAS DSSGKQSTQV MAASMSAFDP LKNQDEINKN 180
  181 VMSAFGLTDD QVSDTNSTSG DPVEKKDETP FGVSVAVGLA VFACLFLSTL LLVLNKCGRR 240
  241 NKFGINRPAV LAPEDGLAMS LHFMTLGGSS LSPTEGKGSG LQGHIIENPQ YFSDACVHHI 300
  301 KRRDIVLKWE LGEGAFGKVF LAESHNLLPE QDKMLVAVKA LKEASESARQ DFQREAELLT 360
  361 MLQHQHIVRF FGVCTEGRPL LMVFEYMRHG DLNRFLRSHG PDAKLLAGGE DVAPGPLGLG 420
  421 QLLAVASQVA AGMVYLAGLH FVHRDLATRN CLVGQGLVVK IGDFGMSRDI YSTDYYRVGG 480
  481 RTMLPIRWMP PESILYRKFT TESDVWSFGV VLWEIFTYGK QPWYQLSNTE AIDCITQGRE 540
  541 LERPRACPPE VYAIMRGCWQ REPQQRHSIK DVHARLQALA QAPPVYLDVL G

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle