YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115745781, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.53
Transmembrane Helix	15	36	0.91
Cytoplasmic	37	50	0.46
Transmembrane Helix	51	73	0.74
Non-Cytoplasmic	74	95	0.62
Transmembrane Helix	96	117	0.82
Cytoplasmic	118	123	0.61
Transmembrane Helix	124	144	0.68
Non-Cytoplasmic	145	153	0.67
Transmembrane Helix	154	178	0.87
Cytoplasmic	179	190	0.87
Transmembrane Helix	191	209	0.94
Non-Cytoplasmic	210	222	0.82
Transmembrane Helix	223	245	0.92
Cytoplasmic	246	358	0.99
Transmembrane Helix	359	393	0.54
Non-Cytoplasmic	394	408	0.52
Transmembrane Helix	409	428	0.92
Cytoplasmic	429	446	0.47
Transmembrane Helix	447	473	0.62
Non-Cytoplasmic	474	491	0.39
Transmembrane Helix	492	520	0.80
Cytoplasmic	521	524	0.32

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPSTTNIPL PLSDILWMVI LGFVISFILS IAIGANDVAN SFGTSVGAKV LTLHQALFFA  60
   61 TIFETLGAVL MGSKVAQTIQ KGIFDVEMYI GREETLVLGE ISALAGCAVW LFVATAFKMP 120
  121 VSTTHSIVGA TLGFHFVVFG IEGIQWLQVG LIVISWITSP VLSGIFSSLI FFILRYFILR 180
  181 KKEPLEPGLR LLPIWYGLVI IVNFFSIFYD GPTTLGFDRI PLWGTFLLSF GSGILVGLAV 240
  241 WFIMVPYIRR KIIGMSSQEE DRAEETQSVF EKKRMYTCHD NKIDQVSLIT GAEPISAVDD 300
  301 KAREDLANEN GVKVDSKDTE RTRMEDGDRR QNESGADGDD TSGRGTSELS EEVRDHPHVT 360
  361 VLCSPLQVLS AIFASFAHGG NDVSNAIGPL IAIWLIYRTG DIAQDEPTPL WVLFYGALGI 420
  421 SLGLWLLGRR VIQTVGEDIT TLTPSSGFSV ELGAAMTVLL ASNVGIPIST THCKIGSVVS 480
  481 VGWLRSREAV NWSLFGTIVL AWGVTLPATM GLSAAIMALL QLAY