YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIGM
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSTKHWGEW LLNLKVAPAG VFGVAFLARV ALVFYGVFQD RTLHVRYTDI DYQVFTDAAR  60
   61 FVTEGRSPYL RATYRYTPLL GWLLTPNIYL SELFGKFLFI SCDLLTAFLL YRLLLLKGLG 120
  121 RRQACGYCVF WLLNPLPMAV SSRGNADSIV ASLVLMVLYL IKKRLVACAA VFYGFAVHMK 180
  181 IYPVTYILPI TLHLLPDRDN DKSLRQFRYT FQACLYELLK RLCNRAVLLF VAVAGLTFFA 240
  241 LSFGFYYEYG WEFLEHTYFY HLTRRDIRHN FSPYFYMLYL TAESKWSFSL GIAAFLPQLI 300
  301 LLSAVSFAYY RDLVFCCFLH TSIFVTFNKV CTSQYFLWYL CLLPLVMPLV RMPWKRAVVL 360
  361 LMLWFIGQAM WLAPAYVLEF QGKNTFLFIW LAGLFFLLIN CSILIQIISH YKEEPLTERI 420
  421 KYD

Type	Start	End	Confidence
Cytoplasmic	1	10	0.85
Transmembrane Helix	11	35	0.82
Non-Cytoplasmic	36	92	0.83
Transmembrane Helix	93	115	0.86
Cytoplasmic	116	225	0.64
Transmembrane Helix	226	247	0.92
Non-Cytoplasmic	248	283	0.87
Transmembrane Helix	284	302	0.84
Cytoplasmic	303	307	0.51
Transmembrane Helix	308	327	0.65
Non-Cytoplasmic	328	334	0.50
Transmembrane Helix	335	350	0.72
Cytoplasmic	351	357	0.63
Transmembrane Helix	358	378	0.91
Non-Cytoplasmic	379	385	0.78
Transmembrane Helix	386	409	0.91
Cytoplasmic	410	423	0.84