YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|31377754, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.58
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.45
Transmembrane Helix	7	27	0.48
Non-Cytoplasmic	28	429	0.97
Transmembrane Helix	430	449	0.87
Cytoplasmic	450	462	0.84
Transmembrane Helix	463	483	0.90
Non-Cytoplasmic	484	497	0.76
Transmembrane Helix	498	523	0.88
Cytoplasmic	524	543	0.86
Transmembrane Helix	544	563	0.71
Non-Cytoplasmic	564	686	0.55
Transmembrane Helix	687	704	0.90
Cytoplasmic	705	713	0.51
Transmembrane Helix	714	731	0.87
Non-Cytoplasmic	732	747	0.55
Transmembrane Helix	748	770	0.75
Cytoplasmic	771	782	0.61
Transmembrane Helix	783	801	0.76
Non-Cytoplasmic	802	805	0.54
Transmembrane Helix	806	824	0.64
Cytoplasmic	825	835	0.61
Transmembrane Helix	836	850	0.59
Non-Cytoplasmic	851	872	0.68
Transmembrane Helix	873	894	0.87
Cytoplasmic	895	910	0.73
Transmembrane Helix	911	930	0.94
Non-Cytoplasmic	931	946	0.81
Transmembrane Helix	947	967	0.88
Cytoplasmic	968	975	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLGSGTFAT CCVAIEVLGI AVFLRGFFPA PVRSSARAEH GAEPPAPEPS AGASSNWTTL  60
   61 PPPLFSKVVI VLIDALRDDF VFGSKGVKFM PYTTYLVEKG ASHSFVAEAK PPTVTMPRIK 120
  121 ALMTGSLPGF VDVIRNLNSP ALLEDSVIRQ AKAAGKRIVF YGDETWVKLF PKHFVEYDGT 180
  181 TSFFVSDYTE VDNNVTRHLD KVLKRGDWDI LILHYLGLDH IGHISGPNSP LIGQKLSEMD 240
  241 SVLMKIHTSL QSKERETPLP NLLVLCGDHG MSETGSHGAS STEEVNTPLI LISSAFERKP 300
  301 GDIRHPKHVQ QTDVAATLAI ALGLPIPKDS VGSLLFPVVE GRPMREQLRF LHLNTVQLSK 360
  361 LLQENVPSYE KDPGFEQFKM SERLHGNWIR LYLEEKHSEV LFNLGSKVLR QYLDALKTLS 420
  421 LSLSAQVAQY DIYSMMVLTL LLLSVPQALR RKAELEVPLS SPGFSLLFYL VILVLSAVHV 480
  481 IVCTSAESSC YFCGLSWLAA GGVMVLASAL LCVIVSVLTN VLVGGNTPRK NPMHPSSRWS 540
  541 ELDLLILLGT AGHVLSLGAS SFVEEEHQTW YFLVNTLCLA LSQETYRNYF LGDDGEPPCG 600
  601 LCVEQGHDGA TAAWQGGPGC DVLERDKGHG SPSTSEVLRG REKWMVLASP WLILACCRLL 660
  661 RSLNQTGVQW AHRPDLGHWL TSSDHKAELS VLAALSLLVV FVLVQRGCSP VSKAALALGL 720
  721 LGVYCYRAAI GSVRFPWRPD SKDISKGIIE ARFVYVFVLG ILFTGTKDLL KSQVIAADFK 780
  781 LKTVGLWEIY SGLVLLAALL FRPHNLPVLA FSLLIQTLMT KFIWKPLRHD AAEITVMHYW 840
  841 FGQAFFYFQG NSNNIATVDI SAGFVGLDTY VEIPAVLLTA LGTYAGPVLW ASHLVHFLSS 900
  901 ETRSGSALSH ACFCYALICS IPVFTYIVLV TSLRYHLFIW SVFSPKLLYE GMHLLITAAV 960
  961 CVFFTAMDQT RLTQS