YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115732277, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	73	0.98
Transmembrane Helix	74	94	0.89
Non-Cytoplasmic	95	100	0.72
Transmembrane Helix	101	123	0.81
Cytoplasmic	124	143	0.81
Transmembrane Helix	144	163	0.84
Non-Cytoplasmic	164	168	0.58
Transmembrane Helix	169	188	0.84
Cytoplasmic	189	193	0.77
Transmembrane Helix	194	215	0.86
Non-Cytoplasmic	216	222	0.69
Transmembrane Helix	223	241	0.81
Cytoplasmic	242	264	0.80
Transmembrane Helix	265	285	0.83
Non-Cytoplasmic	286	290	0.68
Transmembrane Helix	291	311	0.64
Cytoplasmic	312	328	0.69
Transmembrane Helix	329	346	0.80
Non-Cytoplasmic	347	364	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACACRTTQS SNFDLLHGRR WLHCTGSHQL DHKHSRPGLI EPKRHLSLSP AVIVNAAPSK  60
   61 MQPYLRLIRL DKPIGTWLLY LPCTWSIAMA ASPGHFPDVY MLGIFGLGAL LMRGAGCTIN 120
  121 DMWDKDFDKS VERTKVRPLA AGEITQFQAL CFLACQLSAS LAILLSFNWY SVALGASSML 180
  181 LVVSYPLMKR ITYWPQAVLG MAFNWGAILG WAAIHGSCDW SVVLPLYVAG ISWTLVYDTI 240
  241 YGHQDKNDDM LLGLKSTSIF MGDRTKQWLS GFGSLMIGGL VLSGYNAEQT IPYYLAISLA 300
  301 GAQLANQIWT VDINKPEDCW NKFHSNKRLG LIIFAGIVAG TLAKALPDSD EMKDYPEKDI 360
  361 SRKG