YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115675662, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	235	0.64
Transmembrane Helix	236	258	0.72
Non-Cytoplasmic	259	267	0.55
Transmembrane Helix	268	289	0.79
Cytoplasmic	290	348	0.54
Transmembrane Helix	349	372	0.71
Non-Cytoplasmic	373	393	0.52
Transmembrane Helix	394	415	0.91
Cytoplasmic	416	435	0.72
Transmembrane Helix	436	458	0.90
Non-Cytoplasmic	459	497	0.74
Transmembrane Helix	498	520	0.88
Cytoplasmic	521	585	0.75
Transmembrane Helix	586	606	0.91
Non-Cytoplasmic	607	613	0.70
Transmembrane Helix	614	636	0.91
Cytoplasmic	637	643	0.82
Transmembrane Helix	644	662	0.95
Non-Cytoplasmic	663	679	0.85
Transmembrane Helix	680	700	0.91
Cytoplasmic	701	793	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFVTYFSST GKIGALSLDD DRVGNYKDFA LDIAFCKAMV ADDANNYLYW TKKNGIDRKK  60
   61 LDGTGETEEV YTNLAIHNFS GLTFDAEGGR ILFCDGSTTD RAFYQDVSTT SGEIGPAVEL 120
  121 IPGHSGISLT FKPRDVAIFN GKVYWLEAPA KLGIMTHYDN DKHHAESADE AAADMIKPKD 180
  181 KHGNGDVESG VAEFGDDDPT PGSHQKEADA ILTKLKGELS YGIDDVPAWY TAFLLGFQHY 240
  241 LTMVGATVAV PLFLKGGLCI SDDYVTQAEL IATMFFVSGI ATLLQTTFGC RLPIVQGGTF 300
  301 SFLAPTFAIL SVKGACPPSP SVNASMEELA NQTEAFQDRI REIQGDIMVA SLFQVLIGFT 360
  361 GTIGIMLRFI GPLSITPTIC LIGLGLFKEA ADFAAGHWGI AFMTIGLLTI FSQYISRFGV 420
  421 PFYCYNKGQG CHSNKFFIFK LFPVILAILI SWIFCAILTS TNVFPTEIDD YGFQARTDTR 480
  481 FQVLQEASWF RFPYPGQWGL PTVTVAGVFG MLAGVIASMI ESVGDYYACA RMAGAPPPPN 540
  541 HAVNRGIGME GISCLIAGMF GSGNGTTSYS ENIGAIGITK VGSRRVIQYG ALIMIFLGTF 600
  601 TKFSAIFVMI PDPIVGGMFC VMFGMVAAVG LSNLQFVDLN SSRNLFILGF SLFMGLCIPN 660
  661 WVKSGTNDQY INTGVNELDL IIVVLLKTGM FVGGFFGFVL DNTIPGTKKE RGIGEWQRFS 720
  721 GSDGENEVVN DLVFRCYDFP FGMAWIRAGG VGGVVKAAGG QRCIVLFQRD SGQQMKFRFD 780
  781 LADVTMSSLP SSS