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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115665260, gi...
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLATEEVNVQ RGDIAVLPCV LDPTQNAFVI WRRMDPLVEL SLGVMLDSNL DPELKERLSV  60
   61 VVNRQTGEYN LQIVDVRVSD EGSYKCDVIF GLMTSRTVSN SVRLNVYVPP EDGFPLCDVT 120
  121 PAIPLQKGRL VTMSCSTRGG HPPSKVTWYR GRNPVTTAAE NEQQLQWRLT DSDYGVQFSC 180
  181 IETHPALPGV RECSVVPLPF RLSVDLFPAI AEVEVGGEMS FTCQGRGPTD APLDFNWRVN 240
  241 NQNISIKGNW AISGNNGQIL SVSNVSTFDN QSSIICTVTA GPGQSVKTYA VLVVKDIPIR 300
  301 RTSTSSRGKS SSNFTSRPRH KNRQQDGSSL NMSNSISRRL VVIISFGAVM FGVLVGATVA 360
  361 IVSIYRSRKV AGTQSKPKSF KSSFKTGSTK SSRQVGRRNR GFNNRGSRIW RDSRRITFND 420
  421 TQITFADPIL DYDEPPAETT STDPDDSYLG LCPDSLSSSK YEDLHCHVMN SLSFDRFYNE 480
  481 APSVPELEYE DVIADRNWST RKSVENSALS VDGQQNCGEE TLSGESKPEL SAAKDPSKQA 540
  541 QEKVCSYFVR SGRCSYGRNC RFLHPARPEG HSRERGSTAK PDAKTPASST GDKATSQPKQ 600
  601 VCKFYARSGW CSYGYRCRFS HVSKEAASNE ESDANSGSDQ KTNATTEGSI DDGDILVSST 660
  661 SQLSIDDGAE EQPDERKRSK RKSKSAKQKR CRFYDMGHCR VGQRCRFLHA ERAETLQEKD 720
  721 DTNEVAEEDA APKQEEEGEW QPARKPAGPV TSHPLSELKE GDAAKMRETE ITQLKRRFPG 780
  781 DKLEVSDDGD DNPSYRFTVR PTDPDWPYDL SEFEVAVSFP LDYPLSPLQV SLPEDQVLPP 840
  841 IILRHISDST IEWLEARVAT NNLSGKVELM MRPFLRWFDR SLMRLFTEGA RKFKKEVYAK 900
  901 AAGFEFISYG SKEEEKESAD QGESDAPAHP QEEYINHEMD ENRGNIKEED PDEEEEVEEE 960
  961 AEERDDKEEK EGVALKEETP VQSDEPSQSA SSPPQAQHQP PSTLKSSKYV SPTDNRRGTE1020
 1021 IRFPRMEMSE SASILACEKI KIRIQCSRCK DQTDLSVAPG VAMVLGCHKC QSQQAVGYRP1080
 1081 CIIHQFSSVM GFLDLTGCVP VDLIIYECKF MVSCLECSAN SDIQGIQYGQ ERPVWCSKCH1140
 1141 QKMSIAMDTA RFQRLVASVP EGKTEVVAVK KEKRQRDPAI QEGLPLPANG TCQHYKKSFR1200
 1201 WLRFPCCGKC YPCDECHDAD SDHEMKFASR MICGFCSKEQ PYSADKPCLS CGSNVTKSRT1260
 1261 THWEGGTGCR NKSKMSRNDK QKFANLHKTT SRHAQKVEEF QKGKKKK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle