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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115932122, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.07
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLRINTLTG ADTSRRTNVM FVQPDHFTAT GDECSPLQLV KSDDLKQVTS EQLKVHPYKT  60
   61 VKRGQPEVRT EVDTSLPTSC GQRKRSAVHS LARTNNAGHN IQVPDQKVGG FTGFQAKIQG 120
  121 NVTKSSAHYF LTFPKPPQKS VVHEVMCRMV SAAVAKSMPF IQLVGDQPVY ALMVQLKNEN 180
  181 QAKFELILPV LGPFHTQLSF ISAINKRFQG SGLSDILVAA DIIAEGSVDQ ALRGKHYNRS 240
  241 KRCLTLMYEV LMRRVIRHEL SSGVDLSPEL KVSLEILKNP STCSQAQLQA AAADLLENEE 300
  301 LTSFVTKAFE SVEASDSPMA RFWLSFMDMV EILLMNIHAL RTQDWDSFKA SLRMMFPWLR 360
  361 IYDNDKYSKW LVEFWLEISN LWIEMTMNKG SKMKAGWKHI LKNEKMLLAH TKTTNACNKV 420
  421 RNSLHVLANL KDSSKDHREN CKKRLQRDEK GVQDLDKCLG EFDCDPFDET KPTLRSLQSG 480
  481 MMASDQLVVD FENAHKDGEV LVQSFFKERM FSDEKNFDDT MHRNSRCSFT KPPIVKGTSR 540
  541 VTKTDAMENK AMTEVISLAQ KCEDTFRLSD VMQYRVTDEC LPIFNVNGTL RKVMKSKLVD 600
  601 KLNLEEINSL NNYIALVDMG FIWRLSTPSA EDREKQDGTD YTWGDYANKI YNIVAGRHRK 660
  661 ATTIFFVNDP YDLDESIKDS EHQRRTGVTY VGSSRNVFMR RDDPLPTSRL FNNMFKNPGN 720
  721 KVRLQQFLNA EFKIMSLEHP ETTYIYSSLE LSITETNSEK KTFLDLEVSV SIEMEGGINE 780
  781 KPNGVAHQNG GTSVGDEKDI SKLDSSVELK EVKTMEKTDD SEPILINDNE EPPNYNSIVP 840
  841 NGETSPETSE DGSRQITNNF ENVRKTLFGF VIVTGIAVSW VGSTQFSQST YSDTFNAPYF 900
  901 NVWFGTLWMF ICYPFYVLGS WIFKKESRSY SGTVDLYRHS ERVFGSKGLT VKNYFRLVAP 960
  961 FALCWMVTNY MYVYALGKIA AADVTALFSS NTAFIYIFSW IWLHERLVLL PARVLNEYLG1020
 1021 GLEGQCAKWL SPVGCGMSVL LSIGGIVLIS YADGFLGTTA VGIALSIGAA IGSAIYKVLF1080
 1081 KRYIGNATSG QVCLFLSLLA LFDLVFLWPV LLTVYYTGFE QWDWTNMPWN YLCGSSALSV1140
 1141 VFNFLINFGI AVTFPLFIAL GTVVGIPLNA VVDLIFRGRG FGPWKIGGTV LIVFGFLIML1200
 1201 MPERWQEKAY CCKSSNSLTL NVDEEAANND SGIDNPTMEN NASKKEEMNG KV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle