YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8922621, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.82
Transmembrane Helix	7	22	0.84
Non-Cytoplasmic	23	69	0.93
Transmembrane Helix	70	89	0.94
Cytoplasmic	90	98	0.83
Transmembrane Helix	99	120	0.92
Non-Cytoplasmic	121	132	0.69
Transmembrane Helix	133	152	0.87
Cytoplasmic	153	165	0.94
Transmembrane Helix	166	185	0.53
Non-Cytoplasmic	186	202	0.46
Transmembrane Helix	203	222	0.65
Cytoplasmic	223	236	0.72
Transmembrane Helix	237	258	0.87
Non-Cytoplasmic	259	278	0.58
Transmembrane Helix	279	303	0.75
Cytoplasmic	304	318	0.47
Transmembrane Helix	319	338	0.70
Non-Cytoplasmic	339	358	0.47
Transmembrane Helix	359	381	0.81
Cytoplasmic	382	426	0.68
Transmembrane Helix	427	447	0.95
Non-Cytoplasmic	448	464	0.72
Transmembrane Helix	465	487	0.84
Cytoplasmic	488	493	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPRWELALY LLASLGFHFY SFYEVYKVSR EHEEELDQEF ELETDTLFGG LKKDATDFEW  60
   61 SFWMEWGKQW LVWLLLGHMV VSQMATLLAR KHRPWILMLY GMWACWCVLG TPGVAMVLLH 120
  121 TTISFCVAQF RSQLLTWLCS LLLLSTLRLQ GVEEVKRRWY KTENEYYLLQ FTLTVRCLYY 180
  181 TSFSLELCWQ QLPAASTSYS FPWMLAYVFY YPVLHNGPIL SFSEFIKQMQ QQEHDSLKAS 240
  241 LCVLALGLGR LLCWWWLAEL MAHLMYMHAI YSSIPLLETV SCWTLGGLAL AQVLFFYVKY 300
  301 LVLFGVPALL MRLDGLTPPA LPRCVSTMFS FTGMWRYFDV GLHNFLIRYV YIPVGGSQHG 360
  361 LLGTLFSTAM TFAFVSYWHG GYDYLWCWAA LNWLGVTVEN GVRRLVETPC IQDSLARYFS 420
  421 PQARRRFHAA LASCSTSMLI LSNLVFLGGD EVGKTYWNRI FIQGWPWVTL SVLGFLYCYS 480
  481 HVGIAWAQTY ATD