YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115950553, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASNIAPAV ELAIEEIDRR VNDHEYSNFS IHTHPHTTPC HYARLAAAIA AEEYYTHIQK  60
   61 DDRVAAFLGP SCSDLMRGVA ELSAVWGIPV LSGLTGSITV SEKRFFKTLT RSTMILSDGF 120
  121 GLVAESLVSQ FQWRTVAWLW SGTGYVRSYV SAVKNRLDEI GVIYREILTQ NFESTNGITT 180
  181 AGFSSCTDLH LLMIHGTYGL MSYQYNDPAI DIAVEEIRRR VTEGEYVNIS LTLEDVTIRC 240
  241 FGGERQAGAI FAETYFKRPL AAIMGPPCSN QMHSVAELAA AWDIPVLSGL SSSRDLENEA 300
  301 IYSTLTRTTQ IIASGYAYAI VEVLRHFGWG VASVIWDGGI NYWSLIEEAA TRELDRIEFD 360
  361 YHDFSMRAIS DNFLALLNAS KVGRIIFMAV DGDTLREIML HAYDLDLING DYAFINIIPF 420
  421 RDEQLFGDDS WERGDNRDEE AKVAYQALMT IRVFEPTSEA YREFEENVRE RQKRDFNITD 480
  481 SGAGSNIFLA SAFYDVMILY SLAINETIAE GGDVYDGHAV TKKMWNRTFD DTENGTFEVV 540
  541 GNFYLTSSGL KYTPVPGKPI KWPGGATSPP RDTPFCGFNN ENPECQPDDA ELLRMSWKLS 600
  601 WDELVFPEET KSGQSKFSGS FVTSIGHGTS HHRQMFATVA NYKGRLVVIR RIEKTKLDLT 660
  661 REVLKELNYM RQVEHNNLVR FVGACVDAPN ISIISEYCPK GSLQDIVEND ALKLDNMFKN 720
  721 SLITDVMRGL HYLHSSVIML HSRLSSSNCV VDSRFVLKLT DYGLTKFRDT DSNERQTSKN 780
  781 EQKMLWQAPE TLRSANQQPT QKGDIYSVGI IMQEIVTRAR PFEEERSSME IDEIVKKLTE 840
  841 TSSPPFRPEI DPQLCTDEIR SIIQACWEEM PENRPATTDL LSSMKKINKN LSGGNILDNL 900
  901 LSRMEQYATN LETLVEERTA AFLEEKKRSE TLLYEVLPRS VAEQLKQGSS VSPKSYESVT 960
  961 IYFSDIVGFT SISADSTPLQ VVTLLNDLYT CFDGTIGNFD VYKVETIGDA YMVVSGLPIR1020
 1021 NGIHHVKEIA SMALSLVREA YKFRIRHKPE EKLLLRVGVH SGACVAGVVG LRMPRYCLFG1080
 1081 DTVNTASRME STGQAMKVHI SESTKKLLDT FKNFETEPRG EVVLKSLSMV AGVTMIQLSL1140
 1141 LSYHNPTSQL SGGDCCDAGG SEVCRDKCDN RFEICVSRPG SDVDMTLCSF FSANTTKIVD1200
 1201 NSDEITFPTS LLMQDGSSLP NPLTISIPDA WEGVRFKVRV WDVDVVGEQE VDILTKNINY1260
 1261 YPDPNLAYTV QWKPTLSGIE DARLKTGMRV YCGDGYFGPR CHIYCVDSAT YTCEPFTGKK1320
 1321 LCVPGYGGKE CDEDIAECAS SPCQQGGACI DLVNSYRCEC IPGTFGTLCE NNHNECTSVT1380
 1381 CENGGTCQDQ LNDFECTCTE NFQGRFCEVL IDECIGDPCL NGATCEDGIR DYSCICAAGY1440
 1441 QGRDCEIDID ECTSSPCLNE GTCEDKVAGF ECKCVPGFVG DLCQVNVDEC DSMPCKNGGS1500
 1501 CNDLINSFEC ACAAGYENIF CEDNIDECLS SPCQNDSPCI DGIASYTCEC NPGFQGVHCE1560
 1561 INIDECASSP CTHQGTCQDK VNSFGCICQP GFNGTLCENN IDECLGNPCQ NGGTCGDLIN1620
 1621 DFVCDCVEGF EGALCLTNTD ECLSAPCQNA GSCFDEVNGF SCMCAAGFSG TFCEINIAEC1680
 1681 VSQPCLNSGV CDDGINQFIC HCPDGFHGLL CESNTDDCAI NPCINNSTCV DKIDAFVCVC1740
 1741 TEGFEGMYCE VNTNECQSNP CSNGASCLDD INGYSCQCAE GFEGIHCTNN IDECSSNPCE1800
 1801 NSGTCLDQVN GFMCTCPSGF DGLTCGNNID ECTSQPCQNG GTCTDGINNY TCECTPGFNG1860
 1861 IECQFNIDEC QSSPCQHEST CVDVFNGFHC QCKAGFQGAM CEVNIDECTS HPCLNNGTCH1920
 1921 DGINSYTCEC IPGFIGVHCE TDVDECSSLP CQNSATCVDK VNGFMCQCKP GFEGTLCDVN1980
 1981 TDECSSSPCF NMATCHDLTN AYRCNCAPGY NGVHCEHNID ECESTPCQHG STCVDEVNGF2040
 2041 NCECTPGFVG TLCEINIDEC ASQPCFNNGT CHDGINNYTC DCLLGFSGSR CKIDIDDCES2100
 2101 SPCQHGSTCM DEINGFHCQC APGYEGTFCE VDINECLNNP CKNGGACVDL INTYECNCMD2160
 2161 GWEGARCDND ADECISNPCQ NGGTCRDQVD GYQCACDLGF TGLTCETDIN ECLEDPCLNN2220
 2221 GTCEDGINSF TCHCTLGFTG KNCETDIDDC LNSPCLNNAT CIDKVNNFAC DCTAGYEGQL2280
 2281 CEQDTDECAS IPCSNGGNCT DLVNGYKCLC DSGFEGMNCE VNIDECSSIP CQHGGTCQDL2340
 2341 TNSFQCSCQE GYDGPTCQNN IDDCQPKPCQ NEGLCIDEIA SYQCRCLPGF EGITCGINIQ2400
 2401 ECDSSPCREN HTCVDEINGY HCLCLPGFEG VQCEVETNEC MSVTCRYGGT CLDHVNSFTC2460
 2461 ACPYGYTGVF CESLDLGLCG TSCVNGRCAV SFSPEGGVIH TCLCDEGFVG TDCDMEVMSI2520
 2521 SSNILLTNHH PTNNMVDVAT MLSKIFKMSY GDSLKEPKNI EVVIIASSNE SSQLSGSPYT2580
 2581 NTTFYTMVNN KPLTQDELER LLNSMPNEEK DVIMTPYEVF EDTPRVPEES GKKAGWGWSN2640
 2641 WLILVTLVSI IIFLLIVIGC VISR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle