YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115939117, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKMGFDDAMK AVGEFGYTQK IQQVILNSIQ LFGAMHMLSL VFVGREPTTV MCGDELSVYD  60
   61 DVCHMKPPCD DYKYGDEFTS IATEWDLVCE KSHKVGLAQS IFMAGVLFGN VHFGSFSDHY 120
  121 GRLRMTLIGL ALLSVLGTLS AMVWTFEQFL VFRFLVGYGA GGVILSVFVL QTENLSSHHR 180
  181 ALSATCCPST FALGVMLYAL MAYFIRDWRN LLLLSSLPVG AYLLIYFVIP ESPRWLISKG 240
  241 RISEAEDILH EIGRKNGMKV TRSMINLSET KTTPKTDKYG LLDCFKTPVL RMRMIILICS 300
  301 WFTASMVYYG LTMNAGNLGS NVYISFALSG LVELPAYLFG FLVLNRTGRR KAMAASMFVG 360
  361 GVSCLSLLLI SKEDETRVKI RTALALIGKM GISSAFNIVY IYSSELLPTV LRNSGMGICS 420
  421 MAARIGGVVA PQIIPMGDRT TFLIFGGTAL ACAIFDLGLP ETLNKPLPES IDDVERDAAV 480
  481 TDKQEKYSML CLVSGNKGPQ FYQVPPSVVA FATTQGGRLT CSAIGDPTPV VRWVMAADGS 540
  541 AVQNIEHSRI ADGNGTLSFP PFSSKEIIPE VHDGVYRCIA TNRIGSIRSP DIRVNADTWT 600
  601 SVCISIYPRL RGEGRFSVLP SGELHIRDVR DRDAGQYRCT VRNRLTNNNK VSPPAVLHVA 660
  661 EPVNTAPELI QSKADFTLRG GETVELPCVA SGYPLPTYQW TKDGVPVTPG DSRSLRGGNL 720
  721 LLSNVQLENA GRYDCEAVND LGAVSTTRNV IVRDSIAVYF YPQKRSVDVG AFATFNCSVS 780
  781 GYPIEQVTWY KNAQPLDGDD RVTVYENGTM VVGGMRRDDR GMYQCVASNS WQTQEATMQL 840
  841 SLGAAKPIML AHFTNQTLQP GPNLQLSCTV AGNPTPDVTW LRDGLPIPTD PRYTFNDVIN 900
  901 EDSDVISYLN ISRLVSEDGG LYRCEATSEL GAVQHEDRIN VIGRPLVRPL PDVIAIDGTD 960
  961 VSIHCHVVGF PITSITWYKG LTTLPSSMRH NVFPNGTLVI ADVTSYGDGG EYTCVASNAR1020
 1021 GDRSASDMDL IVKVPPVIQP IEPLTLRQGQ RTQLMCIVTR GDYPIHFRWL KDGETIPHGV1080
 1081 GIEFVNGTFS SSLLIADAST VHDGRYTCEA SNLAAAVNYT TALTIQVPPR FVVEPHNTAV1140
 1141 VLNHTVVIAC MANGKPNPDV QWKKAPGPIT TTNFRDLPDD PRFEMQENGS LVIREARVED1200
 1201 AGYYLCHISN SVGMESKTAT LTVFVPATFE QQQQNVTVEL TESITLECIA TGHQPLEIMW1260
 1261 SKNDVPFNRL TTARYDIETV TDGDSVLSSM TIFSAVRDDT ATYICLAQNL HGADEHVIQL1320
 1321 WVQEKPEPPT DLHVVNKTSR GVLLSWQPSF DGNSPVTGFT LEYKNASDAW QTGLPQEHVP1380
 1381 ADLIGYQYSI KHLHPAYTYH VRIFAFNAIG ISDPSKEILF DTEEEDAWQT GLPQEHVPAD1440
 1441 LIGYQYSIKH LHPAYTYHVR IFAFNAIGIS DPSKEILFDT EEEVPVETNY IESRTLTNLK1500
 1501 KFTRYTIQLR AYNRVNVGPW SPQQFVTTLE DVPSEAPHDV SARSVGSTSI MVFWNAPDQV1560
 1561 SLNGILQGYR VYYRPIRENE GFFLSNISFS EDELDYQIYE TTELFAELHN LQKFTNYSLS1620
 1621 VVAHTRVGEG VRSEEKIVRT EQDVPEAPAD IKAHAASPTS IMVSWLPPLY LNGIITHYHL1680
 1681 NIQYREGENE VRQEKELDPT TYYYLVEDLQ TDYEYDFWVK ASTIAGQGES SRIATEIPMS1740
 1741 RVPARIMSFS TTLMTPWKRG VTLDCLPVGD PVLTVEWKKN RLPNVLKPDG RIDILENGSL1800
 1801 VIQSVQSTDA GNYTCRAINE YGSSDSITVR VQVLAPPNPP QLTIGSTSNN AIKVNWRSTG1860
 1861 NGGSSIVAFQ LLYQRTHEQT WERFDVNASL RSFRATDLLC GTGYRFYITA RNKLGVGKPS1920
 1921 DILSVSTQGE IPIPPSTDKI VPFTNASSIT LVLASWQSGG CPIESYSIQY QVLGVDDWEN1980
 1981 IANNLPGNTR DYTVDDLRPL TWYQFRVTAV NTAGPSVYPF RVSTVAFSGS GTAPPIKQST2040
 2041 SRPLAFYEDP RLFGPILGIL TLFVILGFIS YFIHGCRRRR KKSVKSQHVV VETLSGRESN2100
 2101 GNSPSQQNNN RPTVHLPPER EPFLGAYERA ETIAVRQTPW IFNADEEEGD YASEPRRHRG2160
 2161 LADPYATFDY HDGSIYPSMS TFRSDGSSAS LSDCGLMIHD ERLYDIPPEE IAHRGNKRPS2220
 2221 NGSLSTTNES SNREELERAY STGMRIEAAQ FELIQCANKK REDYSPASSS SRSHVSRDHP2280
 2281 SVTNSDVEHG IRNFTASPPM PTVPEANHYA PRRYVHTLEG ARPRDRARMS LTTSPSLVRS2340
 2341 SEESSDVDFE MESSERGSIH VYRPSRYRSN RRVPRRVLAL IHMHVIIMVL RVAAHPKPYD2400
 2401 LIRFTTEHLR VLPKAIFLYL TKVSVLHIAG 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle