YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23397492, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.97
Transmembrane Helix	69	88	0.94
Non-Cytoplasmic	89	98	0.78
Transmembrane Helix	99	117	0.96
Cytoplasmic	118	130	0.85
Transmembrane Helix	131	150	0.96
Non-Cytoplasmic	151	157	0.76
Transmembrane Helix	158	177	0.96
Cytoplasmic	178	185	0.85
Transmembrane Helix	186	205	0.95
Non-Cytoplasmic	206	222	0.86
Transmembrane Helix	223	241	0.96
Cytoplasmic	242	252	0.83
Transmembrane Helix	253	273	0.94
Non-Cytoplasmic	274	284	0.72
Transmembrane Helix	285	302	0.97
Cytoplasmic	303	312	0.81
Transmembrane Helix	313	332	0.94
Non-Cytoplasmic	333	337	0.86
Transmembrane Helix	338	360	0.87
Cytoplasmic	361	364	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPQDSTGVA ELQEPGLPLT DDAPPGATEE PAAAEAAGAP DRGRCWLCLS SPCCSRTEPA  60
   61 KKKAPCPGLG LFYTLLSAFL FSVGSLFVKK VQDVHAVEIS AFRCVFQMLV VIPCLIYRKT 120
  121 GFIGPKGQRI FLILRGVLGS TAMMLIYYAY QTMSLADATV ITFSSPVFTS IFAWICLKEK 180
  181 YSPWDALFTV FTITGVILIV RPPFLFGSDT SGMEESYSGH LKGTFAAIGS AVFAASTLVI 240
  241 LRKMGKSVDY FLSIWYYVVL GLVESVIILS VLGEWSLPYC GLDRLFLIFI GLFGLGGQIF 300
  301 ITKALQIEKA GPVAIMKTMD VVFAFIFQII FFNNVPTWWT VGGALCVVAS NVGAAIRKWY 360
  361 QSSK