YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116052534, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSFIARRLG LLIPTFFGVT LLTFALIRLI PGDPVEVMMG ERRVDPQMHA EALHRLGLDK  60
   61 PLYQQYLDYV GNLAQGNLGE SLTTREGVWH EFLTLFPATL ELSLAAMLFA GTFGLLAGVI 120
  121 AALKRGSLFD HGVMTVSLAG YSMPIFWWGL ILIMLFSVSL GWTPVSGRLD LLYDIEPKTG 180
  181 FMLIDTLLSD EQGSFLDAVR HLILPAIVLG TIPLAVIARM TRSAMLEVLR EDYVRTARAK 240
  241 GLSPARVVFV HALRNALIPV LTVFGLQVGT LLAGAVLTET IFSWPGIGKW LIDAISRRDY 300
  301 PVVQNGILLV ATLVILVNFV VDILYGLANP RIRHQR

Type	Start	End	Confidence
Cytoplasmic	1	8	0.96
Transmembrane Helix	9	30	0.93
Non-Cytoplasmic	31	101	0.97
Transmembrane Helix	102	123	0.93
Cytoplasmic	124	143	0.74
Transmembrane Helix	144	163	0.85
Non-Cytoplasmic	164	200	0.94
Transmembrane Helix	201	220	0.93
Cytoplasmic	221	255	0.93
Transmembrane Helix	256	278	0.85
Non-Cytoplasmic	279	305	0.84
Transmembrane Helix	306	328	0.90
Cytoplasmic	329	336	0.91