YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115528099, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMWGGRGAAW LWIWACLLVT NALAGKSSSQ NADEQKDNTT VFTRILDSLL DGYDNRLRPG  60
   61 LGERVTEVKT DIFVTSIGPV SDHDMEYTID VFFRQSWKDE RLKFKGPMAV LRLNNLMASK 120
  121 IWTPDTFFHN GKKSVAHNMT MPNKLLRITE EGTLLYTMRL TVRAECPMHL EDFPMDAHAC 180
  181 PLKFGSYAYT RAEVVYVWTR GAAQSVVVAD DGSRLNQYDL MGQSVDSGVV QSSTGEYVVM 240
  241 TTHFHLKRKI GYFVIQTYLP CIMTVILSQV SFWLNRESVP ARTVFGVTTV LTMTTLSISA 300
  301 RNSLPKVAYA TAMDWFIAVC YAFVFSALIE FATVNYFTKR GYAWDGKSVV PEKQKKKKES 360
  361 LLKKNNTYTA ATATAFAPNI ARDPGLATIA KSAPPPPTEP KEEPKPKPPE AKKTFNSVSK 420
  421 IDRIARIAFP LLFGTFNLVY WATYLNKKPK LQGMNLQPH

Type	Start	End	Confidence
Signal Peptide	1	24	0.98
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	251	0.98
Transmembrane Helix	252	273	0.84
Cytoplasmic	274	280	0.75
Transmembrane Helix	281	300	0.87
Non-Cytoplasmic	301	314	0.67
Transmembrane Helix	315	337	0.85
Cytoplasmic	338	423	0.87
Transmembrane Helix	424	444	0.79
Non-Cytoplasmic	445	459	0.74