YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115528640, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDSTGNFSL LQRTCSLVVL LCFLHIFVTV IYYMRNSDSR PAFAQNQQQR PTIHRKLAEQ  60
   61 RGTTEDSRPA ANASSNVQEL QICPEEPPRL VGPLRVEFSD PITLEMVRTE NSVLQEGGRF 120
  121 RPPDCIARQK VAMIIPFRNR DEHLKFWLYY LHPILQRQQL DYGVYVINQD GEDTFNRAKL 180
  181 LNIGYAEALK EYDYDCFVFS DVDLIPMDDR NIYKCYNQPR HLAVSMDKFG FRLPYTQYFG 240
  241 GVSSLSKEQF LKINGFPNNY WGWGGEDDDI FNRISSRGMS ISRPDGLVGR CRMIRHERDK 300
  301 QNDPNPQRFD RIAHTRETMA TDGINSLKYN VVKIEKDLLF TKITVDVGKP

Type	Start	End	Confidence
Cytoplasmic	1	13	0.74
Transmembrane Helix	14	34	0.89
Non-Cytoplasmic	35	350	0.88