YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116268031, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	75	0.99
Transmembrane Helix	76	97	0.92
Non-Cytoplasmic	98	163	0.95
Transmembrane Helix	164	185	0.89
Cytoplasmic	186	206	0.84
Transmembrane Helix	207	228	0.82
Non-Cytoplasmic	229	235	0.74
Transmembrane Helix	236	254	0.75
Cytoplasmic	255	263	0.72
Transmembrane Helix	264	286	0.89
Non-Cytoplasmic	287	336	0.79
Transmembrane Helix	337	358	0.87
Cytoplasmic	359	376	0.77
Transmembrane Helix	377	394	0.91
Non-Cytoplasmic	395	448	0.90
Transmembrane Helix	449	469	0.90
Cytoplasmic	470	476	0.71
Transmembrane Helix	477	496	0.88
Non-Cytoplasmic	497	521	0.77
Transmembrane Helix	522	547	0.69
Cytoplasmic	548	768	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEAEGISSA TPTEEMNGAG NLMDFLDEPF PDVGTYEDFH TIDWLREKSK DTDRHRKITS  60
   61 KSKESIWEFI KSLLDAWSGW LVMLLIGLLS GTLAGVIDLA VDWMTDLKEG VCLSAFWYSH 120
  121 EQCCWTSNET TFADRDKCPQ WQKWAELVTG YTEGAGVYVL NYFLYVLWAL FFSFLAVSLV 180
  181 RVFAPYACGS GIPEIKTILS GFIIRGYLGK WTLLIKTVTL VLAVSSGLSL GKEGPLVHVA 240
  241 CCCGNLFCSL FSKYSKNEGK RREVLSAAAA AGVSVAFGAP IGGVLFSLEE VSYYFPLKTL 300
  301 WRSFFAALVA AFTLRSINPF GNNRLVLFYV EYHTPWYMAE LVPFILLGVF GGLWGTLFIR 360
  361 CNIAWCRRRK TTRLGKYPVL EVLAVTGITA VLAFPNPYTR RSTSELISEL FNDCGALESS 420
  421 QLCDYINSPN MTRPVDDIPD RPAGPGVYSA LWQLTLALAF KIIITIFTFG MKIPSGLFIP 480
  481 SMAVGAIAGR IVGIAVEQMA YHHHDWIIFK NWCRPGADCV TPGLYAMVGA AACLGGVTRM 540
  541 TVSLVVIMFE LTGGLEYIVP LMAAAVTSKW VADAFGKEGI YEAHIQLNGY PYLDQDEFTH 600
  601 RTLATDVMRP RRSEPPLSVL TQDSSTLEEA EALITHTDYN GFPVVVSRES ERLIGFVQRR 660
  661 DLILAIKNAR QKQDGVVSNS VVYFTEDAPQ LPASNTQPLK LRRILNLSPF TVTDHTPMET 720
  721 VVDIFRKLGL RQCLVTRSGR LLGIITKKDV LRHMAHMMNQ DPESIMFN