YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	C1GTA_DANRE
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIMKAGSSR CAFSLGFLVG SCSLYVFLRQ VWFEESFSWQ SNGRSSPSPP ISHEQNSSNL  60
   61 TWRVEGSALI NLKHPNQPGE DGHIADELFK KVRILCWVMT GPSNLQSKAQ HVKNTWSRHC 120
  121 NVVLFMSSEE DRSFPTVGLG TGEGRDQLYW KTIRAFHYAL KNHGHEADWF LKADDDTFVV 180
  181 VDNLRWILSN YTPEQPIYFG KRFKPYTKQG YMSGGAGYVL SKEALRRFVE GFSTKVCTHT 240
  241 TPVEDLAMGQ CLEKMGVLAG DSRDSLHRET FHPFIPEHHL TGKFSKTFWY WNYCYYPIVE 300
  301 GPQCCSDLAV SFHYVDPVLM YTLEYYTYHL RPFGYQHRYQ PPVPAVLSLL SQTVKTTTET 360
  361 QRSEEGAKEK PALTNSVNPR AEEVQTTETS YKITNAAQER NTTHRSAG

Type	Start	End	Confidence
Cytoplasmic	1	10	0.68
Transmembrane Helix	11	28	0.73
Non-Cytoplasmic	29	408	0.99