YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|237702951, gi...
Protein type:	Transmembrane
Type Confidence:	0.61
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSSAAGRKR KKSILLTAVR SIRSANADFP RIIIKPGGFS PLGFLFVTIL RYPCISLRYR  60
   61 EKKMKKAGLL FLVMIVIAVV ATGIGYWKLT GEESDTLRKI VLEQCLPNQQ ENQNPSPCAE 120
  121 VKPNAGYVVL KDRHGPLQYL LMPTYRINGT ESPLLTDPST PNFFWLAWQA RDFMSQKYGQ 180
  181 PVPDRAVSLA INSRTGRTQN HFHIHISCIR PDVREQLDNN LANISSRWLP LPGGLRGHEY 240
  241 LARRVTESEL VQRSPFMMLA EEVPEAREHM GSYGLAMVRQ SDNSFVLLAT QRNLLTLNRA 300
  301 SAEEIQDHQC EILR

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.47
Transmembrane Helix	37	55	0.72
Cytoplasmic	56	66	0.85
Transmembrane Helix	67	87	0.91
Non-Cytoplasmic	88	314	0.98