YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|218364771, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVYRHYGRY FYRRRFINQY ALLKKDTQET EVPPMKKIII LLSLLILLPL TATSNPLIPI  60
   61 MKTLFTDVTG TVPDAEEIAH KAELFRQQTG VAPFIVVLPD INNEASLRQN GKAMLAHAAS 120
  121 SMSNVKGSVL LLFTTREPRL IMITNGQVES SMDDKHLGLL VENHTLAYLH ADLWYQGINN 180
  181 ALAVLQAQIL KQPTPPLTYY PHPGQQHEND PPGSTTTLGL FAWAVAFIVF AAFFNYTTRL 240
  241 YYALKFAVAM AVANMGYQAL CLYIDNSFAI TRISPLWAGL IGVCTFIAAL LWTSKR

Type	Start	End	Confidence
Cytoplasmic	1	37	0.71
Transmembrane Helix	38	58	0.62
Non-Cytoplasmic	59	214	0.82
Transmembrane Helix	215	236	0.89
Cytoplasmic	237	241	0.71
Transmembrane Helix	242	264	0.83
Non-Cytoplasmic	265	272	0.70
Transmembrane Helix	273	293	0.93
Cytoplasmic	294	296	0.75