YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARV1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNGGRSGLQ QGKGNVDGVA ATPTAASASC QYRCIECNQE AKELYRDYNH GVLKITICKS  60
   61 CQKPVDKYIE YDPVIILINA ILCKAQAYRH ILFNTQINIH GKLCIFCLLC EAYLRWWQLQ 120
  121 DSNQNTAPDD LIRYAKEWDF YRMFAIAALE QTAYFIGIFT FLWVERPMTA KKKPNFILLL 180
  181 KALLLSSYGK LLLIPAVIWE HDYTSVCLKL IKVFVLTSNF QAIRVTLNIN RKLSFLAVLS 240
  241 GLLLESIMVY FFQSMEWDVG SDYAIFKSQD F

Type	Start	End	Confidence
Cytoplasmic	1	98	0.90
Transmembrane Helix	99	117	0.78
Non-Cytoplasmic	118	142	0.86
Transmembrane Helix	143	164	0.88
Cytoplasmic	165	176	0.88
Transmembrane Helix	177	198	0.67
Non-Cytoplasmic	199	205	0.56
Transmembrane Helix	206	223	0.57
Cytoplasmic	224	232	0.74
Transmembrane Helix	233	253	0.90
Non-Cytoplasmic	254	271	0.86